Literature DB >> 9488472

The Drosophila gene for antizyme requires ribosomal frameshifting for expression and contains an intronic gene for snRNP Sm D3 on the opposite strand.

I P Ivanov1, K Simin, A Letsou, J F Atkins, R F Gesteland.   

Abstract

Previously, a Drosophila melanogaster sequence with high homology to the sequence for mammalian antizyme (ornithine decarboxylase antizyme) was reported. The present study shows that homology of this coding sequence to its mammalian antizyme counterpart also extends to a 5' open reading frame (ORF) which encodes the amino-terminal part of antizyme and overlaps the +1 frame (ORF2) that encodes the carboxy-terminal three-quarters of the protein. Ribosomes shift frame from the 5' ORF to ORF2 with an efficiency regulated by polyamines. At least in mammals, this is part of an autoregulatory circuit. The shift site and 23 of 25 of the flanking nucleotides which are likely important for efficient frameshifting are identical to their mammalian homologs. In the reverse orientation, within one of the introns of the Drosophila antizyme gene, the gene for snRNP Sm D3 is located. Previously, it was shown that two closely linked P-element transposon insertions caused the gutfeeling phenotype of embryonic lethality and aberrant neuronal and muscle cell differentiation. The present work shows that defects in either snRNP Sm D3 or antizyme, or both, are likely causes of the phenotype.

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Year:  1998        PMID: 9488472      PMCID: PMC108870          DOI: 10.1128/MCB.18.3.1553

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  32 in total

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Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

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Authors:  T Lehmeier; K Foulaki; R Lührmann
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

3.  The appearance of an ornithine decarboxylase inhibitory protein upon the addition of putrescine to cell cultures.

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Journal:  Biochim Biophys Acta       Date:  1976-04-23

Review 4.  How proteins enter the nucleus.

Authors:  P A Silver
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

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Authors:  N H Brown; F C Kafatos
Journal:  J Mol Biol       Date:  1988-09-20       Impact factor: 5.469

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Authors:  S Rogers; R Wells; M Rechsteiner
Journal:  Science       Date:  1986-10-17       Impact factor: 47.728

7.  Involvement of antizyme-like regulatory protein in polyamine-caused repression of ornithine decarboxylase in insect-derived Trichoplusia ni 5 cells.

Authors:  K Koguchi; Y Murakami; S Hayashi
Journal:  Biochim Biophys Acta       Date:  1997-07-24

8.  Analyses of ornithine decarboxylase antizyme mRNA with a cDNA cloned from rat liver.

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Journal:  J Biochem       Date:  1990-09       Impact factor: 3.387

9.  Sequence, structure, and codon preference of the Drosophila ribosomal protein 49 gene.

Authors:  P O O'Connell; M Rosbash
Journal:  Nucleic Acids Res       Date:  1984-07-11       Impact factor: 16.971

10.  brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2.

Authors:  J W Tamkun; R Deuring; M P Scott; M Kissinger; A M Pattatucci; T C Kaufman; J A Kennison
Journal:  Cell       Date:  1992-02-07       Impact factor: 41.582

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  19 in total

1.  Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins.

Authors:  S N Prokopenko; Y He; Y Lu; H J Bellen
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

2.  Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets.

Authors:  Jan Rehwinkel; Ivica Letunic; Jeroen Raes; Peer Bork; Elisa Izaurralde
Journal:  RNA       Date:  2005-10       Impact factor: 4.942

3.  Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.

Authors:  Alexander Stark; Michael F Lin; Pouya Kheradpour; Jakob S Pedersen; Leopold Parts; Joseph W Carlson; Madeline A Crosby; Matthew D Rasmussen; Sushmita Roy; Ameya N Deoras; J Graham Ruby; Julius Brennecke; Emily Hodges; Angie S Hinrichs; Anat Caspi; Benedict Paten; Seung-Won Park; Mira V Han; Morgan L Maeder; Benjamin J Polansky; Bryanne E Robson; Stein Aerts; Jacques van Helden; Bassem Hassan; Donald G Gilbert; Deborah A Eastman; Michael Rice; Michael Weir; Matthew W Hahn; Yongkyu Park; Colin N Dewey; Lior Pachter; W James Kent; David Haussler; Eric C Lai; David P Bartel; Gregory J Hannon; Thomas C Kaufman; Michael B Eisen; Andrew G Clark; Douglas Smith; Susan E Celniker; William M Gelbart; Manolis Kellis
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

4.  Does disparate occurrence of autoregulatory programmed frameshifting in decoding the release factor 2 gene reflect an ancient origin with loss in independent lineages?

Authors:  B C Persson; J F Atkins
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

5.  Identification of putative programmed -1 ribosomal frameshift signals in large DNA databases.

Authors:  A B Hammell; R C Taylor; S W Peltz; J D Dinman
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

6.  Discovery of a spermatogenesis stage-specific ornithine decarboxylase antizyme: antizyme 3.

Authors:  I P Ivanov; A Rohrwasser; D A Terreros; R F Gesteland; J F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

7.  Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes.

Authors:  Michael F Lin; Joseph W Carlson; Madeline A Crosby; Beverley B Matthews; Charles Yu; Soo Park; Kenneth H Wan; Andrew J Schroeder; L Sian Gramates; Susan E St Pierre; Margaret Roark; Kenneth L Wiley; Rob J Kulathinal; Peili Zhang; Kyl V Myrick; Jerry V Antone; Susan E Celniker; William M Gelbart; Manolis Kellis
Journal:  Genome Res       Date:  2007-11-07       Impact factor: 9.043

8.  Antizyme mRNA distribution and regulation in rat small intestinal enterocytes.

Authors:  J E Gill; J F Christian; E R Seidel
Journal:  Dig Dis Sci       Date:  2002-07       Impact factor: 3.199

9.  P elements inserted in the vicinity of or within the Drosophila snRNP SmD3 gene nested in the first intron of the Ornithine Decarboxylase Antizyme gene affect only the expression of SmD3.

Authors:  Heide Schenkel; Susanne Hanke; Cécilia De Lorenzo; Rolf Schmitt; Bernard M Mechler
Journal:  Genetics       Date:  2002-06       Impact factor: 4.562

10.  Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast.

Authors:  I P Ivanov; R F Gesteland; S Matsufuji; J F Atkins
Journal:  RNA       Date:  1998-10       Impact factor: 4.942

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