Literature DB >> 9451024

New conformational constraints in isotopically (13C) enriched oligosaccharides.

M J Milton1, R Harris, M A Probert, R A Field, S W Homans.   

Abstract

Multidimensional heteronuclear NMR studies have been applied to the resonance assignment and conformational analysis of 13C-enriched Neu5Acalpha2-3Galbeta1-4Glc. It is demonstrated that three-dimensional ROESY-HSQC experiments provide through-space distance restraints which cannot be observed with conventional homonuclear 1H techniques due to resonance overlap. In particular, connectivities demonstrating the existence of the "anti" conformation about the Galbeta1-4Glc glycosidic linkage are unambiguously observed. It is shown that 13C isotopic enrichment of the trisaccharide at a level >95% enables straightforward measurement of trans-glycosidic 1H-13C and 13C-13C coupling constants and a Karplus-type relation is derived for the latter. In total 15 conformational restraints were obtained for the trisaccharide in aqueous solution, all of which were in excellent agreement with theoretical parameters computed from a 5 ns molecular dynamics simulation of the glycan.

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Year:  1998        PMID: 9451024     DOI: 10.1093/glycob/8.2.147

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  7 in total

1.  Structure and binding analysis of Polyporus squamosus lectin in complex with the Neu5Ac{alpha}2-6Gal{beta}1-4GlcNAc human-type influenza receptor.

Authors:  Renuka Kadirvelraj; Oliver C Grant; Irwin J Goldstein; Harry C Winter; Hiroaki Tateno; Elisa Fadda; Robert J Woods
Journal:  Glycobiology       Date:  2011-03-24       Impact factor: 4.313

2.  Atomic-resolution conformational analysis of the GM3 ganglioside in a lipid bilayer and its implications for ganglioside-protein recognition at membrane surfaces.

Authors:  Mari L DeMarco; Robert J Woods
Journal:  Glycobiology       Date:  2008-12-04       Impact factor: 4.313

3.  Conformational analysis of the Sd(a) determinant-containing tetrasaccharide and two mimics in aqueous solution by using 1H NMR ROESY spectroscopy in combination with MD simulations.

Authors:  J L Jiménez Blanco; J J van Rooijen; P J Erbel; B R Leeflang; J P Kamerling; J F Vliegenthart
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

4.  A Karplus equation for (3)J(HCCN) in amino sugar derivatives.

Authors:  Bruce Coxon
Journal:  Carbohydr Res       Date:  2007-02-25       Impact factor: 2.104

Review 5.  Developments in the Karplus equation as they relate to the NMR coupling constants of carbohydrates.

Authors:  Bruce Coxon
Journal:  Adv Carbohydr Chem Biochem       Date:  2009       Impact factor: 12.200

6.  Probing the acceptor substrate binding site of Trypanosoma cruzi trans-sialidase with systematically modified substrates and glycoside libraries.

Authors:  Jennifer A Harrison; K P Ravindranathan Kartha; Eric J L Fournier; Todd L Lowary; Carles Malet; Ulf J Nilsson; Ole Hindsgaul; Sergio Schenkman; James H Naismith; Robert A Field
Journal:  Org Biomol Chem       Date:  2011-01-21       Impact factor: 3.876

7.  NMR spectra of oligosaccharides at ultra-high field (900 MHz) have better resolution than expected due to favourable molecular tumbling.

Authors:  Charles D Blundell; Michelle A C Reed; Michael Overduin; Andrew Almond
Journal:  Carbohydr Res       Date:  2006-06-19       Impact factor: 2.104

  7 in total

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