Literature DB >> 17368582

A Karplus equation for (3)J(HCCN) in amino sugar derivatives.

Bruce Coxon1.   

Abstract

The (1)H-(15)N coupling constants of a suite of organic-soluble amino sugar derivatives have been measured by one-dimensional and two-dimensional (1)H/(15)N heteronuclear single quantum, multiple bond correlation (HSQMBC), and the values so obtained are compared with those measured by analysis of (1)H spectra of (15)N-labeled amino sugar derivatives. A number of bicyclic amino sugar models have been studied, including methyl 2- (and 3-)amino-4,6-O-benzylidene-2- (and 3-)deoxy-alpha-D-hexopyranosides in chair or skew conformations, and methyl 2,6-anhydro-3-deoxy-3-phthalimido-alpha-d-mannopyranoside in a locked, almost classical boat conformation. The magnitudes of the vicinal (1)H-(15)N coupling constants (3)J(HCCN) have been correlated with (1)H/(15)N dihedral angles phi computed for the favored conformations by molecular dynamics with molecular mechanics energy minimization. Non-linear regression of the coupling constants on the dihedral angles has yielded a Karplus equation: (3)J(HCCN)=3.1 cos(2) phi-0.6 cos phi+0.4. The coefficients of the terms in this equation have been compared with those reported for 15 other pairs of nuclei, and the coefficient of the important cos(2)phi term found to be numerically smallest for (3)J(HCCN).

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Year:  2007        PMID: 17368582      PMCID: PMC3110058          DOI: 10.1016/j.carres.2007.02.023

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  10 in total

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Authors:  R L Lichter; J D Roberts
Journal:  J Org Chem       Date:  1970-08       Impact factor: 4.354

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Authors:  B Coxon; L F Johnson
Journal:  Carbohydr Res       Date:  1971-11       Impact factor: 2.104

3.  Deuterium isotope effects in carbohydrates revisited. Cryoprobe studies of the anomerization and NH to ND deuterium isotope induced 13C NMR chemical shifts of acetamidodeoxy and aminodeoxy sugars.

Authors:  Bruce Coxon
Journal:  Carbohydr Res       Date:  2005-07-25       Impact factor: 2.104

4.  Boat conformations synthesis, NMR spectroscopy, and molecular dynamics of methyl 4,6-O-benzylidene-3-deoxy-3-phthalimido-alpha-D-altropyranoside derivatives.

Authors:  B Coxon; R C Reynolds
Journal:  Carbohydr Res       Date:  2001-04-23       Impact factor: 2.104

5.  New conformational constraints in isotopically (13C) enriched oligosaccharides.

Authors:  M J Milton; R Harris; M A Probert; R A Field; S W Homans
Journal:  Glycobiology       Date:  1998-02       Impact factor: 4.313

6.  [13C,15N]2-Acetamido-2-deoxy-D-aldohexoses and their methyl glycosides: synthesis and NMR investigations of J-couplings involving 1H, 13C, and 15N.

Authors:  Yuping Zhu; Qingfeng Pan; Christophe Thibaudeau; Shikai Zhao; Ian Carmichael; Anthony S Serianni
Journal:  J Org Chem       Date:  2006-01-20       Impact factor: 4.354

7.  A molecular mechanical force field for the conformational analysis of oligosaccharides: comparison of theoretical and crystal structures of Man alpha 1-3Man beta 1-4GlcNAc.

Authors:  S W Homans
Journal:  Biochemistry       Date:  1990-10-02       Impact factor: 3.162

8.  Complete assignment of carbon signals in a stereospecific peptide via selective and single off-resonance proton decoupling experiments. Analysis of the carbon-13 nuclear magnetic resonance spectrum of alumichrome at 67.88 MHz.

Authors:  A De Marco; M Llinás
Journal:  Biochemistry       Date:  1979-09-04       Impact factor: 3.162

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Authors:  B Mulloy; T A Frenkiel; D B Davies
Journal:  Carbohydr Res       Date:  1988-12-31       Impact factor: 2.104

10.  The solution structure of the circular trinucleotide cr(GpGpGp) determined by NMR and molecular mechanics calculation.

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Journal:  Nucleic Acids Res       Date:  1994-07-11       Impact factor: 16.971

  10 in total
  1 in total

Review 1.  Developments in the Karplus equation as they relate to the NMR coupling constants of carbohydrates.

Authors:  Bruce Coxon
Journal:  Adv Carbohydr Chem Biochem       Date:  2009       Impact factor: 12.200

  1 in total

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