Literature DB >> 9449317

Elasticity theory of the B-DNA to S-DNA transition.

A Ahsan1, J Rudnick, R Bruinsma.   

Abstract

We propose in this note a simple model--the two-state Worm Like Chain--to describe the elasticity of the recently discovered stress-induced transformation from B-DNA to S-DNA. The model reduces for low tractions to the well-known Worm Like chain theory, which is used to describe the elastic properties of B-DNA, while in the limit of high chain-bending moduli it reduces to the two-state Ising model proposed by Cluzel et al. for the B-S transition [Cluzel, P., A. Lebrun, C. Heller, R. Lavery, J-L. Viovy, D. Chatenay, and F. Caron. 1996. DNA: an extensible molecule. Science. 271:792-794]. Our model can be treated analytically to produce an explicit form of the force-extension relationship which agrees reasonably with the observations. We use the model to show that conformational fluctuations of the chain play a role also for the B to S transformation.

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Year:  1998        PMID: 9449317      PMCID: PMC1299369          DOI: 10.1016/S0006-3495(98)77774-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  4 in total

1.  DNA: an extensible molecule.

Authors:  P Cluzel; A Lebrun; C Heller; R Lavery; J L Viovy; D Chatenay; F Caron
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

2.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

3.  Modelling extreme stretching of DNA.

Authors:  A Lebrun; R Lavery
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

4.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

  4 in total
  19 in total

1.  Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting.

Authors:  M C Williams; J R Wenner; I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Authors:  M C Williams; J R Wenner; I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

3.  Deformation-enhanced fluctuations in the red cell skeleton with theoretical relations to elasticity, connectivity, and spectrin unfolding.

Authors:  J C Lee; D E Discher
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

4.  The Ising model in physics and statistical genetics.

Authors:  J Majewski; H Li; J Ott
Journal:  Am J Hum Genet       Date:  2001-08-20       Impact factor: 11.025

5.  A three-state model with loop entropy for the overstretching transition of DNA.

Authors:  Thomas R Einert; Douglas B Staple; Hans-Jürgen Kreuzer; Roland R Netz
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

6.  Theoretical study of structural changes caused by applying mechanical strain on peptide L24.

Authors:  Miroslav Krajčí; Ján Urban; Pavel Mach
Journal:  J Mol Model       Date:  2010-05-12       Impact factor: 1.810

7.  Exact theory of kinkable elastic polymers.

Authors:  Paul A Wiggins; Rob Phillips; Philip C Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-02-23

8.  Ionic effects on overstretching transition of B-DNA.

Authors:  Hongxia Fu; Chan Ghee Koh; Hu Chen
Journal:  Eur Phys J E Soft Matter       Date:  2005-05-27       Impact factor: 1.890

9.  DNA overstretching transition: ionic strength effects.

Authors:  Olli Punkkinen; Per Lyngs Hansen; Ling Miao; Ilpo Vattulainen
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

10.  Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Authors:  Manoel Manghi; Nicolas Destainville; John Palmeri
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

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