Literature DB >> 9448274

In vitro assembly of a ribonucleoprotein particle corresponding to the platform domain of the 30S ribosomal subunit.

S C Agalarov1, E N Zheleznyakova, O M Selivanova, L A Zheleznaya, N I Matvienko, V D Vasiliev, A S Spirin.   

Abstract

A fragment of the 16S RNA of Thermus thermophilus corresponding to the central domain (nucleotides 547-895) has been prepared by transcription in vitro. Incubation of this fragment with the total 30S ribosomal proteins has resulted in the formation of a compact 12S ribonucleoprotein particle. This particle contained five T. thermophilus proteins corresponding to Escherichia coli ribosomal proteins S6, S8, S11, S15, and possibly S18, all of which were previously shown to interact with the central domain of the 16S RNA and to be localized in the platform (side bulge) of the 30S ribosomal subunit. When examined by electron microscopy, isolated particles have an appearance that is similar in size and shape to the corresponding morphological features of the 30S subunit. We conclude that the central domain of the 16S RNA can independently and specifically assemble with a defined subset of ribosomal proteins into a compact ribonucleoprotein particle corresponding to the platform (side bulge) of the 30S subunit.

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Year:  1998        PMID: 9448274      PMCID: PMC18650          DOI: 10.1073/pnas.95.3.999

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice.

Authors:  K R Lata; R K Agrawal; P Penczek; R Grassucci; J Zhu; J Frank
Journal:  J Mol Biol       Date:  1996-09-13       Impact factor: 5.469

2.  Nucleotide sequence of Thermus thermophilus HB8 gene coding 16S rRNA.

Authors:  N V Murzina; D P Vorozheykina; N I Matvienko
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

3.  Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA.

Authors:  P Svensson; L M Changchien; G R Craven; H F Noller
Journal:  J Mol Biol       Date:  1988-03-20       Impact factor: 5.469

4.  Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.

Authors:  W A Held; B Ballou; S Mizushima; M Nomura
Journal:  J Biol Chem       Date:  1974-05-25       Impact factor: 5.157

5.  Regulation of glutamine synthetase. XII. Electron microscopy of the enzyme from Escherichia coli.

Authors:  R C Valentine; B M Shapiro; E R Stadtman
Journal:  Biochemistry       Date:  1968-06       Impact factor: 3.162

6.  Neutron scattering study of the 13 S fragment of 16 S RNA and its complex with ribosomal protein S4.

Authors:  I N Serdyuk; J L Shpungin; G Zaccai
Journal:  J Mol Biol       Date:  1980-02-15       Impact factor: 5.469

7.  Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.

Authors:  D A Melton; P A Krieg; M R Rebagliati; T Maniatis; K Zinn; M R Green
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

8.  Interaction of ribosomal proteins S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA from Escherichia coli.

Authors:  R J Gregory; M L Zeller; D L Thurlow; R L Gourse; M J Stark; A E Dahlberg; R A Zimmermann
Journal:  J Mol Biol       Date:  1984-09-15       Impact factor: 5.469

9.  Quaternary structure of the ribosomal 30S subunit: model and its experimental testing.

Authors:  A S Spirin; I N Serdyuk; J L Shpungin; V D Vasiliev
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

10.  A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit.

Authors:  R Brimacombe; J Atmadja; W Stiege; D Schüler
Journal:  J Mol Biol       Date:  1988-01-05       Impact factor: 5.469

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  14 in total

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Authors:  S C Agalarov; J R Williamson
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Review 2.  After the ribosome structures: how are the subunits assembled?

Authors:  James R Williamson
Journal:  RNA       Date:  2003-02       Impact factor: 4.942

3.  Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor.

Authors:  Ahmad Jomaa; Geordie Stewart; Jason A Mears; Inga Kireeva; Eric D Brown; Joaquin Ortega
Journal:  RNA       Date:  2011-09-29       Impact factor: 4.942

4.  Interdependencies govern multidomain architecture in ribosomal small subunit assembly.

Authors:  Deepika Calidas; Gloria M Culver
Journal:  RNA       Date:  2010-12-14       Impact factor: 4.942

5.  Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit.

Authors:  Srikanta Ghosh; Simpson Joseph
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

Review 6.  Structure and dynamics of bacterial ribosome biogenesis.

Authors:  Joseph H Davis; James R Williamson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 7.  Non-coding RNAs in chromatin folding and nuclear organization.

Authors:  Sergey V Razin; Alexey A Gavrilov
Journal:  Cell Mol Life Sci       Date:  2021-06-11       Impact factor: 9.261

8.  A local role for the small ribosomal subunit primary binder rpS5 in final 18S rRNA processing in yeast.

Authors:  Andreas Neueder; Steffen Jakob; Gisela Pöll; Jan Linnemann; Rainer Deutzmann; Herbert Tschochner; Philipp Milkereit
Journal:  PLoS One       Date:  2010-04-19       Impact factor: 3.240

9.  Analysis of the conformation of the 3' major domain of Escherichia coli16S ribosomal RNA using site-directed photoaffinity crosslinking.

Authors:  A Montpetit; C Payant; J M Nolan; L Brakier-Gingras
Journal:  RNA       Date:  1998-11       Impact factor: 4.942

10.  Binding interactions between the core central domain of 16S rRNA and the ribosomal protein S15 determined by molecular dynamics simulations.

Authors:  Wen Li; Buyong Ma; Bruce A Shapiro
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

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