Literature DB >> 9447594

Accurate sequencing by hybridization for DNA diagnostics and individual genomics.

S Drmanac1, D Kita, I Labat, B Hauser, C Schmidt, J D Burczak, R Drmanac.   

Abstract

Medical DNA diagnostics will increasingly rely on an accurate and inexpensive identification of mutations that affect the function of a gene. To validate diagnostic sequencing by hybridization (SBH), a number of p53 samples were analyzed with the complete set of 8192 noncomplementary 7-mer oligonucleotides. In four repeated, blind experiments we accurately sequenced 1.1 kb per each of 12 homozygote and heterozygote samples possessing base substitutions, insertions, and deletions. This SBH variant offers a high throughput platform to inexpensively sequence individual gene or pathogen genome samples within the clinical laboratory setting.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9447594     DOI: 10.1038/nbt0198-54

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  36 in total

Review 1.  Mutational analysis using oligonucleotide microarrays.

Authors:  J G Hacia; F S Collins
Journal:  J Med Genet       Date:  1999-10       Impact factor: 6.318

2.  Restriction primers as short as 6-mers for PCR amplification of bacterial and plant genomic DNA and plant viral RNA.

Authors:  K H Ryu; S H Choi; J S Lee
Journal:  Mol Biotechnol       Date:  2000-01       Impact factor: 2.695

3.  Gene expression analysis with universal n-mer arrays.

Authors:  R Michael van Dam; Stephen R Quake
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

4.  The folding of large RNAs studied by hybridization to arrays of complementary oligonucleotides.

Authors:  M Sohail; S Akhtar; E M Southern
Journal:  RNA       Date:  1999-05       Impact factor: 4.942

5.  A computational method for resequencing long DNA targets by universal oligonucleotide arrays.

Authors:  Itsik Pe'er; Naama Arbili; Ron Shamir
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-12       Impact factor: 11.205

6.  Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays.

Authors:  Darrell P Chandler; Gregory J Newton; Jonathan A Small; Don S Daly
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

7.  Development of chemically modified glass surfaces for nucleic acid, protein and small molecule microarrays.

Authors:  László Hackler; György Dormán; Zoltán Kele; László Urge; Ferenc Darvas; László G Puskás
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

8.  Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization.

Authors:  Miguel Angel Reyes-López; Alfonso Méndez-Tenorio; Rogelio Maldonado-Rodríguez; Mitchel J Doktycz; James T Fleming; Kenneth L Beattie
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

9.  Decoding randomly ordered DNA arrays.

Authors:  Kevin L Gunderson; Semyon Kruglyak; Michael S Graige; Francisco Garcia; Bahram G Kermani; Chanfeng Zhao; Diping Che; Todd Dickinson; Eliza Wickham; Jim Bierle; Dennis Doucet; Monika Milewski; Robert Yang; Chris Siegmund; Juergen Haas; Lixin Zhou; Arnold Oliphant; Jian-Bing Fan; Steven Barnard; Mark S Chee
Journal:  Genome Res       Date:  2004-04-12       Impact factor: 9.043

Review 10.  DNA sequencing by CE.

Authors:  Barry L Karger; András Guttman
Journal:  Electrophoresis       Date:  2009-06       Impact factor: 3.535

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.