Literature DB >> 19517496

DNA sequencing by CE.

Barry L Karger1, András Guttman.   

Abstract

Sequencing of human and other genomes has been at the center of interest in the biomedical field over the past several decades and is now leading toward an era of personalized medicine. During this time, DNA-sequencing methods have evolved from the labor-intensive slab gel electrophoresis, through automated multiCE systems using fluorophore labeling with multispectral imaging, to the "next-generation" technologies of cyclic-array, hybridization based, nanopore and single molecule sequencing. Deciphering the genetic blueprint and follow-up confirmatory sequencing of Homo sapiens and other genomes were only possible with the advent of modern sequencing technologies that were a result of step-by-step advances with a contribution of academics, medical personnel and instrument companies. While next-generation sequencing is moving ahead at breakneck speed, the multicapillary electrophoretic systems played an essential role in the sequencing of the Human Genome, the foundation of the field of genomics. In this prospective, we wish to overview the role of CE in DNA sequencing based in part of several of our articles in this journal.

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Year:  2009        PMID: 19517496      PMCID: PMC2782523          DOI: 10.1002/elps.200900218

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  42 in total

1.  Rapid DNA sequencing of more than 1000 bases per run by capillary electrophoresis using replaceable linear polyacrylamide solutions.

Authors:  E Carrilho; M C Ruiz-Martinez; J Berka; I Smirnov; W Goetzinger; A W Miller; D Brady; B L Karger
Journal:  Anal Chem       Date:  1996-10-01       Impact factor: 6.986

2.  Accurate sequencing by hybridization for DNA diagnostics and individual genomics.

Authors:  S Drmanac; D Kita; I Labat; B Hauser; C Schmidt; J D Burczak; R Drmanac
Journal:  Nat Biotechnol       Date:  1998-01       Impact factor: 54.908

3.  Capillary gel electrophoresis for rapid, high resolution DNA sequencing.

Authors:  H Swerdlow; R Gesteland
Journal:  Nucleic Acids Res       Date:  1990-03-25       Impact factor: 16.971

4.  Single strand conformational polymorphism using capillary electrophoresis with two-dye laser-induced fluorescence detection.

Authors:  K Hebenbrock; P M Williams; B L Karger
Journal:  Electrophoresis       Date:  1995-08       Impact factor: 3.535

5.  The use of liquid polyacrylamide in electrophoresis. II. Relationship between gel viscosity and molecular sieving.

Authors:  H J Bode
Journal:  Anal Biochem       Date:  1977-12       Impact factor: 3.365

6.  A fully integrated microfluidic genetic analysis system with sample-in-answer-out capability.

Authors:  Christopher J Easley; James M Karlinsey; Joan M Bienvenue; Lindsay A Legendre; Michael G Roper; Sanford H Feldman; Molly A Hughes; Erik L Hewlett; Tod J Merkel; Jerome P Ferrance; James P Landers
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

7.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

8.  DNA sequencing by capillary electrophoresis with replaceable linear polyacrylamide and laser-induced fluorescence detection.

Authors:  M C Ruiz-Martinez; J Berka; A Belenkii; F Foret; A W Miller; B L Karger
Journal:  Anal Chem       Date:  1993-10-15       Impact factor: 6.986

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Poly(ethyleneoxide) for high-resolution and high-speed separation of DNA by capillary electrophoresis.

Authors:  H T Chang; E S Yeung
Journal:  J Chromatogr B Biomed Appl       Date:  1995-07-07
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  17 in total

Review 1.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

2.  [Big Data Revolution or Data Hubris? : On the Data Positivism of Molecular Biology].

Authors:  Gabriele Gramelsberger
Journal:  NTM       Date:  2017-12

Review 3.  Overview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseases.

Authors:  Jared M Churko; Gary L Mantalas; Michael P Snyder; Joseph C Wu
Journal:  Circ Res       Date:  2013-06-07       Impact factor: 17.367

4.  Analysis of inorganic polyphosphates by capillary gel electrophoresis.

Authors:  Andrew Lee; George M Whitesides
Journal:  Anal Chem       Date:  2010-08-15       Impact factor: 6.986

5.  Adapting capillary gel electrophoresis as a sensitive, high-throughput method to accelerate characterization of nucleic acid metabolic enzymes.

Authors:  Lucia Greenough; Kelly M Schermerhorn; Laurie Mazzola; Joanna Bybee; Danielle Rivizzigno; Elizabeth Cantin; Barton E Slatko; Andrew F Gardner
Journal:  Nucleic Acids Res       Date:  2015-09-13       Impact factor: 16.971

6.  DNA Polymerase Activity Assay Using Near-infrared Fluorescent Labeled DNA Visualized by Acrylamide Gel Electrophoresis.

Authors:  Eliza L Lewis; Aaron M Leconte
Journal:  J Vis Exp       Date:  2017-10-06       Impact factor: 1.355

7.  Rapid screening of complex DNA samples by single-molecule amplification and sequencing.

Authors:  Jiaqi Huang; Zongli Zheng; Anders F Andersson; Lars Engstrand; Weimin Ye
Journal:  PLoS One       Date:  2011-05-19       Impact factor: 3.240

Review 8.  Proteomic challenges: sample preparation techniques for microgram-quantity protein analysis from biological samples.

Authors:  Peter Feist; Amanda B Hummon
Journal:  Int J Mol Sci       Date:  2015-02-05       Impact factor: 5.923

Review 9.  Stepping stones in DNA sequencing.

Authors:  Henrik Stranneheim; Joakim Lundeberg
Journal:  Biotechnol J       Date:  2012-08-08       Impact factor: 4.677

10.  Artificially designed pathogens - a diagnostic option for future military deployments.

Authors:  Andreas E Zautner; Wycliffe O Masanta; Rebecca Hinz; Ralf Matthias Hagen; Hagen Frickmann
Journal:  Mil Med Res       Date:  2015-07-09
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