Literature DB >> 9441941

Electron Tomography of Single Ice-Embedded Macromolecules: Three-Dimensional Alignment and Classification

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Abstract

From 3-D reconstructions of automatically recorded tilt series of ice-embedded macromolecules, several hundred 3-D images of single particles can be extracted. Here we describe correlation-based techniques to align the particles with respect to translation and orientation in 3-D and the calculation of an averaged reconstruction after application of the correct weighting function to the particle projections. Multivariate statistical analysis and classification are applied to the set of three-dimensionally reconstructed particles to investigate interimage variations on the 3-D level. Copyright 1997 Academic Press. Copyright 1997 Academic Press

Entities:  

Year:  1997        PMID: 9441941     DOI: 10.1006/jsbi.1997.3934

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  34 in total

1.  Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines.

Authors:  Steven J Ludtke; Catherine L Lawson; Gerard J Kleywegt; Helen M Berman; Wah Chiu
Journal:  Pac Symp Biocomput       Date:  2011

Review 2.  Principles of cryo-EM single-particle image processing.

Authors:  Fred J Sigworth
Journal:  Microscopy (Oxf)       Date:  2015-12-24       Impact factor: 1.571

3.  3D structure of eukaryotic flagella in a quiescent state revealed by cryo-electron tomography.

Authors:  Daniela Nicastro; J Richard McIntosh; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-24       Impact factor: 11.205

4.  Single particle cryoelectron tomography characterization of the structure and structural variability of poliovirus-receptor-membrane complex at 30 A resolution.

Authors:  Mihnea Bostina; Doryen Bubeck; Cindi Schwartz; Daniela Nicastro; David J Filman; James M Hogle
Journal:  J Struct Biol       Date:  2007-08-24       Impact factor: 2.867

5.  Methods for aligning and for averaging 3D volumes with missing data.

Authors:  Michael F Schmid; Christopher R Booth
Journal:  J Struct Biol       Date:  2007-10-01       Impact factor: 2.867

6.  Structure, function and inhibition of the two- and three-domain 4Fe-4S IspG proteins.

Authors:  Yi-Liang Liu; Francisco Guerra; Ke Wang; Weixue Wang; Jikun Li; Cancan Huang; Wei Zhu; Kevin Houlihan; Zhi Li; Yong Zhang; Satish K Nair; Eric Oldfield
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

7.  Classification and 3D averaging with missing wedge correction in biological electron tomography.

Authors:  A Bartesaghi; P Sprechmann; J Liu; G Randall; G Sapiro; S Subramaniam
Journal:  J Struct Biol       Date:  2008-03-21       Impact factor: 2.867

8.  Structure, assembly and dynamics of macromolecular complexes by single particle cryo-electron microscopy.

Authors:  Alexandre Durand; Gabor Papai; Patrick Schultz
Journal:  J Nanobiotechnology       Date:  2013-12-10       Impact factor: 10.435

9.  Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization.

Authors:  Sjors H W Scheres; Roberto Melero; Mikel Valle; Jose-Maria Carazo
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

10.  Electron-tomographic analysis of intraflagellar transport particle trains in situ.

Authors:  Gaia Pigino; Stefan Geimer; Salvatore Lanzavecchia; Eugenio Paccagnini; Francesca Cantele; Dennis R Diener; Joel L Rosenbaum; Pietro Lupetti
Journal:  J Cell Biol       Date:  2009-10-05       Impact factor: 10.539

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