Literature DB >> 9417979

Identification of spherical virus particles in digitized images of entire electron micrographs.

I M Boier Martin1, D C Marinescu, R E Lynch, T S Baker.   

Abstract

New methods are described that should facilitate high-resolution (5-10 A) image reconstructions from low-dose, low-contrast electron micrographs of frozen-hydrated specimens and processing of large, digital images produced by new imaging devices and modern electron microscopes. Existing techniques for automatic selection of images of individual biological macromolecules from electron micrographs are inefficient or unreliable. We describe the Crosspoint method (CP), which produces good quality solutions with relatively small miss rates and few false hits, and an extension of this method along with a procedure for refining its solution. Two algorithms for processing large images, one based on image subsampling, the other on image decomposition, are described. A large image is first compressed (e.g., by subsampling) and the CP method is applied to the compressed image to produce an initial solution. The information gathered at this stage is used to cut the original image into subimages and then to refine the particle coordinates in each subimage. An interactive environment for experimenting with particle identification methods is described. Copyright 1997 Academic Press.

Mesh:

Year:  1997        PMID: 9417979     DOI: 10.1006/jsbi.1997.3901

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  6 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization.

Authors:  Vivek Singh; Dan C Marinescu; Timothy S Baker
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

3.  Orientation Refinement of Virus Structures with Unknown Symmetry.

Authors:  Yongchang Ji; Dan C Marinescu; Wei Zhang; Timothy S Baker
Journal:  Proc IPDPS (Conf)       Date:  2003-04-22

4.  Single particle analysis integrated with microscopy: a high-throughput approach for reconstructing icosahedral particles.

Authors:  Xiaodong Yan; Giovanni Cardone; Xing Zhang; Z Hong Zhou; Timothy S Baker
Journal:  J Struct Biol       Date:  2014-03-05       Impact factor: 2.867

5.  Virus Particle Detection by Convolutional Neural Network in Transmission Electron Microscopy Images.

Authors:  Eisuke Ito; Takaaki Sato; Daisuke Sano; Etsuko Utagawa; Tsuyoshi Kato
Journal:  Food Environ Virol       Date:  2018-01-19       Impact factor: 2.778

6.  Three-dimensional reconstruction of icosahedral particles from single micrographs in real time at the microscope.

Authors:  Giovanni Cardone; Xiaodong Yan; Robert S Sinkovits; Jinghua Tang; Timothy S Baker
Journal:  J Struct Biol       Date:  2013-07-25       Impact factor: 2.867

  6 in total

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