Literature DB >> 9414239

Determination of interspin distances between spin labels attached to insulin: comparison of electron paramagnetic resonance data with the X-ray structure.

H J Steinhoff1, N Radzwill, W Thevis, V Lenz, D Brandenburg, A Antson, G Dodson, A Wollmer.   

Abstract

A method was developed to determine the interspin distances of two or more nitroxide spin labels attached to specific sites in proteins. This method was applied to different conformations of spin-labeled insulins. The electron paramagnetic resonance (EPR) line broadening due to dipolar interaction is determined by fitting simulated EPR powder spectra to experimental data, measured at temperatures below 200 K to freeze the protein motion. The experimental spectra are composed of species with different relative nitroxide orientations and interspin distances because of the flexibility of the spin label side chain and the variety of conformational substates of proteins in frozen solution. Values for the average interspin distance and for the distance distribution width can be determined from the characteristics of the dipolar broadened line shape. The resulting interspin distances determined for crystallized insulins in the R6 and T6 structure agree nicely with structural data obtained by x-ray crystallography and by modeling of the spin-labeled samples. The EPR experiments reveal slight differences between crystal and frozen solution structures of the B-chain amino termini in the R6 and T6 states of hexameric insulins. The study of interspin distances between attached spin labels can be applied to obtain structural information on proteins under conditions where other methods like two-dimensional nuclear magnetic resonance spectroscopy or x-ray crystallography are not applicable.

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Year:  1997        PMID: 9414239      PMCID: PMC1181230          DOI: 10.1016/S0006-3495(97)78353-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

1.  Short alanine-based peptides may form 3(10)-helices and not alpha-helices in aqueous solution.

Authors:  S M Miick; G V Martinez; W R Fiori; A P Todd; G L Millhauser
Journal:  Nature       Date:  1992-10-15       Impact factor: 49.962

2.  Phenol stabilizes more helix in a new symmetrical zinc insulin hexamer.

Authors:  U Derewenda; Z Derewenda; E J Dodson; G G Dodson; C D Reynolds; G D Smith; C Sparks; D Swenson
Journal:  Nature       Date:  1989-04-13       Impact factor: 49.962

3.  Position-dependent local motions in spin-labeled analogues of a short alpha-helical peptide determined by electron spin resonance.

Authors:  S M Miick; A P Todd; G L Millhauser
Journal:  Biochemistry       Date:  1991-10-01       Impact factor: 3.162

4.  Spin-labeling studies of the conformational changes in the vicinity of D36, D38, T46, and E161 of bacteriorhodopsin during the photocycle.

Authors:  T Rink; J Riesle; D Oesterhelt; K Gerwert; H J Steinhoff
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

5.  Residual motion of hemoglobin-bound spin labels as a probe for protein dynamics.

Authors:  H Steinhoff; K Lieutenant; J Schlitter
Journal:  Z Naturforsch C J Biosci       Date:  1989 Mar-Apr

6.  Two dimensional diffusion of small molecules on protein surfaces: an EPR study of the restricted translational diffusion of protein-bound spin labels.

Authors:  O Dombrowsky; C Karin; C Schneiderhahn
Journal:  Eur Biophys J       Date:  1991       Impact factor: 1.733

7.  A simple method for determination of rotational correlation times and separation of rotational and polarity effects from EPR spectra of spin-labeled biomolecules in a wide correlation time range.

Authors:  H J Steinhoff
Journal:  J Biochem Biophys Methods       Date:  1988-12

8.  Colicin E1 binding to membranes: time-resolved studies of spin-labeled mutants.

Authors:  Y K Shin; C Levinthal; F Levinthal; W L Hubbell
Journal:  Science       Date:  1993-02-12       Impact factor: 47.728

9.  Experimental molecular dynamics of an alanine-based helical peptide determined by spin label electron spin resonance.

Authors:  S M Miick; K M Casteel; G L Millhauser
Journal:  Biochemistry       Date:  1993-08-10       Impact factor: 3.162

10.  Phenol-promoted structural transformation of insulin in solution.

Authors:  A Wollmer; B Rannefeld; B R Johansen; K R Hejnaes; P Balschmidt; F B Hansen
Journal:  Biol Chem Hoppe Seyler       Date:  1987-08
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  40 in total

1.  Structural insights into the early steps of receptor-transducer signal transfer in archaeal phototaxis.

Authors:  A A Wegener; J P Klare; M Engelhard; H J Steinhoff
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

2.  Calculation of rigid-body conformational changes using restraint-driven Cartesian transformations.

Authors:  P Sompornpisut; Y S Liu; E Perozo
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

3.  Time-resolved detection of transient movement of helices F and G in doubly spin-labeled bacteriorhodopsin.

Authors:  N Radzwill; K Gerwert; H J Steinhoff
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

4.  The structure of the inter-SH2 domain of class IA phosphoinositide 3-kinase determined by site-directed spin labeling EPR and homology modeling.

Authors:  Zheng Fu; Eliah Aronoff-Spencer; Jonathan M Backer; Gary J Gerfen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

5.  Optimal bundling of transmembrane helices using sparse distance constraints.

Authors:  Ken Sale; Jean-Loup Faulon; Genetha A Gray; Joseph S Schoeniger; Malin M Young
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

6.  Interresidual distance determination by four-pulse double electron-electron resonance in an integral membrane protein: the Na+/proline transporter PutP of Escherichia coli.

Authors:  Gunnar Jeschke; Christoph Wegener; Monika Nietschke; Heinrich Jung; Heinz-Jürgen Steinhoff
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

7.  Monomeric and dimeric conformation of the vinculin tail five-helix bundle in solution studied by EPR spectroscopy.

Authors:  Christoph Abé; Franziska Dietrich; Prasad Gajula; Monique Benz; Klaus-Peter Vogel; Maurice van Gastel; Susanne Illenberger; Wolfgang H Ziegler; Heinz-Jürgen Steinhoff
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

8.  Membrane region M2C2 in subunit KtrB of the K+ uptake system KtrAB from Vibrio alginolyticus forms a flexible gate controlling K+ flux: an electron paramagnetic resonance study.

Authors:  Inga Hänelt; Dorith Wunnicke; Meike Müller-Trimbusch; Marc Vor der Brüggen; Inga Kraus; Evert P Bakker; Heinz-Jürgen Steinhoff
Journal:  J Biol Chem       Date:  2010-06-23       Impact factor: 5.157

9.  Transmembrane gate movements in the type II ATP-binding cassette (ABC) importer BtuCD-F during nucleotide cycle.

Authors:  Benesh Joseph; Gunnar Jeschke; Birke A Goetz; Kaspar P Locher; Enrica Bordignon
Journal:  J Biol Chem       Date:  2011-09-27       Impact factor: 5.157

10.  Molecular Rationale for Improved Dynamic Nuclear Polarization of Biomembranes.

Authors:  Adam N Smith; Umar T Twahir; Thierry Dubroca; Gail E Fanucci; Joanna R Long
Journal:  J Phys Chem B       Date:  2016-08-04       Impact factor: 2.991

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