Literature DB >> 25146430

Accuracy of density functionals in the description of dispersion interactions and IR spectra of phosphates and phosphorylated compounds.

Ashwani Sharma1, Gilles Ohanessian, Carine Clavaguéra.   

Abstract

The performances of quantum chemistry methods (i.e., DFT and ab initio) in calculating the structural and vibrational properties of phosphates and phosphorylated compounds have been evaluated. Diethyl-phosphate, phosphonic acid, dihydrogen phosphate anion, phosphoric acid dimer and protonated glycylphosphotyrosine dipeptide were selected for our study. Geometry and harmonic frequency deviations were investigated, pointing out the contribution of dispersion interactions on diethyl-phosphate, [Gly-pTyr+H](+) and the phosphoric acid dimer. The B3LYP-D functional, followed by CC2 and MP2 methods, revealed significant accuracy for frequency calculations of the majority of the phosphorylated compounds in comparison with available experimental data. These investigations provide a guide to the accurate computation of phosphorylated biological compounds.

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Year:  2014        PMID: 25146430     DOI: 10.1007/s00894-014-2426-y

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  42 in total

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3.  Assessment of the efficiency of long-range corrected functionals for some properties of large compounds.

Authors:  Denis Jacquemin; Eric A Perpète; Giovanni Scalmani; Michael J Frisch; Rika Kobayashi; Carlo Adamo
Journal:  J Chem Phys       Date:  2007-04-14       Impact factor: 3.488

4.  Assessment of the MP2 method, along with several basis sets, for the computation of interaction energies of biologically relevant hydrogen bonded and dispersion bound complexes.

Authors:  Kevin E Riley; Pavel Hobza
Journal:  J Phys Chem A       Date:  2007-07-25       Impact factor: 2.781

5.  Evaluation of MP2, DFT, and DFT-D methods for the prediction of infrared spectra of peptides.

Authors:  Yves Bouteiller; Jean Christophe Poully; Charles Desfrançois; Gilles Grégoire
Journal:  J Phys Chem A       Date:  2009-06-04       Impact factor: 2.781

6.  Accurate molecular van der Waals interactions from ground-state electron density and free-atom reference data.

Authors:  Alexandre Tkatchenko; Matthias Scheffler
Journal:  Phys Rev Lett       Date:  2009-02-20       Impact factor: 9.161

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8.  Empirically corrected DFT and semi-empirical methods for non-bonding interactions.

Authors:  Michael E Foster; Karl Sohlberg
Journal:  Phys Chem Chem Phys       Date:  2009-11-07       Impact factor: 3.676

9.  Density Functional and Semiempirical Molecular Orbital Methods Including Dispersion Corrections for the Accurate Description of Noncovalent Interactions Involving Sulfur-Containing Molecules.

Authors:  Claudio A Morgado; Jonathan P McNamara; Ian H Hillier; Neil A Burton; Mark A Vincent
Journal:  J Chem Theory Comput       Date:  2007-09       Impact factor: 6.006

10.  Assessment of multicoefficient correlation methods, second-order Møller-Plesset perturbation theory, and density functional theory for H3O(+)(H2O)n (n = 1-5) and OH(-)(H2O)n (n = 1-4).

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Journal:  J Phys Chem B       Date:  2008-02-05       Impact factor: 2.991

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  2 in total

1.  Ab initio study of hydrogen bonding in the H3PO2 dimer and H3PO2-DMF complex.

Authors:  Irina V Fedorova; Lyubov P Safonova
Journal:  J Mol Model       Date:  2017-07-08       Impact factor: 1.810

2.  Structure of Diferrocenyl Thioketone: From Molecule to Crystal.

Authors:  Piotr Matczak; Grzegorz Mlostoń; Róża Hamera-Fałdyga; Helmar Görls; Wolfgang Weigand
Journal:  Molecules       Date:  2019-10-31       Impact factor: 4.411

  2 in total

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