Literature DB >> 9399835

Databases and software for the analysis of mutations in the human p53 gene, human hprt gene and both the lacI and lacZ gene in transgenic rodents.

N F Cariello1, G R Douglas, N J Gorelick, D W Hart, J D Wilson, T Soussi.   

Abstract

We have created databases and software applications for the analysis of DNA mutations at the human p53 gene, the human hprt gene and both the rodent transgenic lacI and lacZ loci. The databases themselves are stand-alone dBASE files and the software for analysis of the databases runs on IBM-compatible computers with Microsoft Windows. Each database has a separate software analysis program. The software created for these databases permit the filtering, ordering, report generation and display of information in the database. In addition, a significant number of routines have been developed for the analysis of single base substitutions. One method of obtaining the databases and software is via the World Wide Web. Open the following home page with a Web Browser: http://sunsite.unc.edu/dnam/mainpage. html . Alternatively, the databases and programs are available via public FTP from: anonymous@sunsite.unc.edu. There is no password required to enter the system. The databases and software are found beneath the subdirectory: pub/academic/biology/dna-mutations. Two other programs are available at the site, a program for comparison of mutational spectra and a program for entry of mutational data into a relational database.

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Year:  1998        PMID: 9399835      PMCID: PMC147201          DOI: 10.1093/nar/26.1.198

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Database and software for the analysis of mutations at the human p53 gene.

Authors:  N F Cariello; C Beroud; T Soussi
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

2.  Cloned mouse lymphocytes permit analysis of somatic mutations that occur in vivo.

Authors:  I M Jones; K Burkhart-Schultz; T L Crippen
Journal:  Somat Cell Mol Genet       Date:  1987-07

Review 3.  Transgenic systems for in vivo mutation analysis.

Authors:  G S Provost; P L Kretz; R T Hamner; C D Matthews; B J Rogers; K S Lundberg; M J Dycaico; J M Short
Journal:  Mutat Res       Date:  1993-07       Impact factor: 2.433

Review 4.  p53 mutations in human cancers.

Authors:  M Hollstein; D Sidransky; B Vogelstein; C C Harris
Journal:  Science       Date:  1991-07-05       Impact factor: 47.728

Review 5.  TP53 tumor suppressor gene: a model for investigating human mutagenesis.

Authors:  C Caron de Fromentel; T Soussi
Journal:  Genes Chromosomes Cancer       Date:  1992-01       Impact factor: 5.006

6.  In vivo somatic mutations in human lymphocytes frequently result from major gene alterations.

Authors:  D R Turner; A A Morley; M Haliandros; R Kutlaca; B J Sanderson
Journal:  Nature       Date:  1985 May 23-29       Impact factor: 49.962

7.  Database and software for the analysis of mutations in the human p53 gene.

Authors:  N F Cariello; L Cui; C Beroud; T Soussi
Journal:  Cancer Res       Date:  1994-08-15       Impact factor: 12.701

8.  Alterations of the hprt gene in human in vivo-derived 6-thioguanine-resistant T lymphocytes.

Authors:  R J Albertini; J P O'Neill; J A Nicklas; N H Heintz; P C Kelleher
Journal:  Nature       Date:  1985 Jul 25-31       Impact factor: 49.962

9.  Software for the analysis of mutations at the human hprt gene.

Authors:  N F Cariello
Journal:  Mutat Res       Date:  1994-04       Impact factor: 2.433

10.  Computer program for the analysis of mutational spectra: application to p53 mutations.

Authors:  N F Cariello; W W Piegorsch; W T Adams; T R Skopek
Journal:  Carcinogenesis       Date:  1994-10       Impact factor: 4.944

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  5 in total

1.  'A variant of uncertain significance' and the proliferation of human disease gene databases.

Authors:  David R Nelson
Journal:  Hum Genomics       Date:  2005-03       Impact factor: 4.639

2.  The unexpected landscape of in vivo somatic mutation in a human epithelial cell lineage.

Authors:  Lorel M Colgin; Alden F M Hackmann; Mary J Emond; Raymond J Monnat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

3.  IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools.

Authors:  P Hainaut; T Hernandez; A Robinson; P Rodriguez-Tome; T Flores; M Hollstein; C C Harris; R Montesano
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 4.  The cellular and molecular carcinogenic effects of radon exposure: a review.

Authors:  Aaron Robertson; James Allen; Robin Laney; Alison Curnow
Journal:  Int J Mol Sci       Date:  2013-07-05       Impact factor: 5.923

5.  Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes.

Authors:  Adnan S Syed; Matteo D'Antonio; Francesca D Ciccarelli
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

  5 in total

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