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Literature DB >> 9399834

The RNA modification database--1998.

Abstract

The RNA modification database provides a comprehensive listing of posttranscriptionally modified nucleosides from RNA, and is maintained as an updated version of the initial printed report [Limbach,P.A., Crain,P.F. and McCloskey,J.A. (1994) Nucleic Acids Res. , 22, 2183-2196]. Information provided for each nucleoside includes: the type of RNA in which it occurs and phylogenetic distribution; common chemical name and symbol; Chemical Abstracts registry number and index name; chemical structure; initial literature citations for structural characterization or occurrence, and for chemical synthesis. The data are available through the World Wide Web at: http://www-medlib.med.utah/RNAmods/RNAmods .html

Entities: Chemical

Mesh：

Year: 1998 PMID： 9399834 PMCID： PMC147197 DOI： 10.1093/nar/26.1.196

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

4 in total

1. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts.

Authors: J Ofengand; A Bakin
Journal: J Mol Biol Date: 1997-02-21 Impact factor: 5.469

Review 2. Summary: the modified nucleosides of RNA.

Authors: P A Limbach; P F Crain; J A McCloskey
Journal: Nucleic Acids Res Date: 1994-06-25 Impact factor: 16.971

3. Compilation of tRNA sequences and sequences of tRNA genes.

Authors: M Sprinzl; C Horn; M Brown; A Ioudovitch; S Steinberg
Journal: Nucleic Acids Res Date: 1998-01-01 Impact factor: 16.971

Review 4. Transfer RNA modification.

Authors: G R Björk; J U Ericson; C E Gustafsson; T G Hagervall; Y H Jönsson; P M Wikström
Journal: Annu Rev Biochem Date: 1987 Impact factor: 23.643

4 in total

28 in total

1. Suppression of nonsense mutations induced by expression of an RNA complementary to a conserved segment of 23S rRNA.

Authors: N S Chernyaeva; E J Murgola; A S Mankin
Journal: J Bacteriol Date: 1999-09 Impact factor: 3.490

2. Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors: Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal: Nucleic Acids Res Date: 2002-04-01 Impact factor: 16.971

Review 3. Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin.

Authors: Michael P Terns; Rebecca M Terns
Journal: Gene Expr Date: 2002

4. A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase.

Authors: Martine Roovers; Johan Wouters; Janusz M Bujnicki; Catherine Tricot; Victor Stalon; Henri Grosjean; Louis Droogmans
Journal: Nucleic Acids Res Date: 2004-01-22 Impact factor: 16.971

5. A nano-chip-LC/MSn based strategy for characterization of modified nucleosides using reduced porous graphitic carbon as a stationary phase.

Authors: Anders Michael Bernth Giessing; Lincoln Greyson Scott; Finn Kirpekar
Journal: J Am Soc Mass Spectrom Date: 2011-04-15 Impact factor: 3.109

6. The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii.

Authors: Warren Sun; Xiaohui Xu; Marina Pavlova; Aled M Edwards; Andrzej Joachimiak; Alexei Savchenko; Dinesh Christendat
Journal: Protein Sci Date: 2005-10-31 Impact factor: 6.725

7. The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP.

Authors: Marie-Hélène Renalier; Nicole Joseph; Christine Gaspin; Patricia Thebault; Annie Mougin
Journal: RNA Date: 2005-07 Impact factor: 4.942

8. Crystallization and preliminary X-ray characterization of the nitrile reductase QueF: a queuosine-biosynthesis enzyme.

Authors: Manal A Swairjo; Robert R Reddy; Bobby Lee; Steven G Van Lanen; Shannon Brown; Valérie de Crécy-Lagard; Dirk Iwata-Reuyl; Paul Schimmel
Journal: Acta Crystallogr Sect F Struct Biol Cryst Commun Date: 2005-09-30

9. Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Authors: Hideto Takami; Yoshihiro Takaki; Gab-Joo Chee; Shinro Nishi; Shigeru Shimamura; Hiroko Suzuki; Satomi Matsui; Ikuo Uchiyama
Journal: Nucleic Acids Res Date: 2004-12-01 Impact factor: 16.971

10. Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation.

Authors: Maureen S Lalonde; Yuhong Zuo; Jianwei Zhang; Xin Gong; Shaohui Wu; Arun Malhotra; Zhongwei Li
Journal: RNA Date: 2007-09-13 Impact factor: 4.942