Literature DB >> 9399824

The tmRNA Website.

K P Williams1, D P Bartel.   

Abstract

tmRNA (also known as 10Sa RNA) is so-named for its dual tRNA-like and mRNA-like nature. It is employed in a remarkable trans -translation process to add a C-terminal peptide tag to the incomplete protein product of a broken mRNA; the tag targets the abnormal protein for proteolysis. tmRNA sequences have been identified in genomes of diverse bacterial phyla, including the most deeply branching. They have also been identified in plastids of the 'red' lineage. The tmRNA Website (http://www.wi.mit. edu/bartel/tmRNA/home ) contains a database currently including sequences from 37 species, with provisional alignments, as well as the tentatively predicted proteolysis tag sequences. A brief review and guide to the literature is also provided.

Mesh:

Substances:

Year:  1998        PMID: 9399824      PMCID: PMC147250          DOI: 10.1093/nar/26.1.163

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  Differential amplification of rRNA genes by polymerase chain reaction.

Authors:  A L Reysenbach; L J Giver; G S Wickham; N R Pace
Journal:  Appl Environ Microbiol       Date:  1992-10       Impact factor: 4.792

2.  10Sa RNA, a small stable RNA of Escherichia coli, is functional.

Authors:  B K Oh; D Apirion
Journal:  Mol Gen Genet       Date:  1991-09

Review 3.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Authors:  R I Amann; W Ludwig; K H Schleifer
Journal:  Microbiol Rev       Date:  1995-03

4.  tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis.

Authors:  C Ushida; H Himeno; T Watanabe; A Muto
Journal:  Nucleic Acids Res       Date:  1994-08-25       Impact factor: 16.971

5.  A role for a small stable RNA in modulating the activity of DNA-binding proteins.

Authors:  D M Retallack; D I Friedman
Journal:  Cell       Date:  1995-10-20       Impact factor: 41.582

6.  Role for 10Sa RNA in the growth of lambda-P22 hybrid phage.

Authors:  D M Retallack; L L Johnson; D I Friedman
Journal:  J Bacteriol       Date:  1994-04       Impact factor: 3.490

7.  Characterization of 10S RNA: a new stable rna molecule from Escherichia coli.

Authors:  B K Ray; D Apirion
Journal:  Mol Gen Genet       Date:  1979-07-02

8.  Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli.

Authors:  J E Kirby; J E Trempy; S Gottesman
Journal:  J Bacteriol       Date:  1994-04       Impact factor: 3.490

9.  C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.

Authors:  G F Tu; G E Reid; J G Zhang; R L Moritz; R J Simpson
Journal:  J Biol Chem       Date:  1995-04-21       Impact factor: 5.157

10.  A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli.

Authors:  Y Komine; M Kitabatake; T Yokogawa; K Nishikawa; H Inokuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1994-09-27       Impact factor: 11.205

View more
  12 in total

1.  The tmRNA website.

Authors:  K P Williams
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The tmRNA Website: invasion by an intron.

Authors:  Kelly P Williams
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue.

Authors:  Gang Dong; Jacek Nowakowski; David W Hoffman
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

4.  Descent of a split RNA.

Authors:  Kelly P Williams
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

5.  Evaluation and refinement of tmRNA structure using gene sequences from natural microbial communities.

Authors:  S T Kelley; J K Harris; N R Pace
Journal:  RNA       Date:  2001-09       Impact factor: 4.942

6.  The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.

Authors:  Pulcherie Gueneau de Novoa; Kelly P Williams
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

7.  Traffic at the tmRNA gene.

Authors:  Kelly P Williams
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

8.  Predicting RNA secondary structures with pseudoknots by MCMC sampling.

Authors:  Dirk Metzler; Markus E Nebel
Journal:  J Math Biol       Date:  2007-06-23       Impact factor: 2.259

9.  Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches.

Authors:  B Felden; K Hanawa; J F Atkins; H Himeno; A Muto; R F Gesteland; J A McCloskey; P F Crain
Journal:  EMBO J       Date:  1998-06-01       Impact factor: 11.598

10.  Tfold: efficient in silico prediction of non-coding RNA secondary structures.

Authors:  Stéfan Engelen; Fariza Tahi
Journal:  Nucleic Acids Res       Date:  2010-01-04       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.