Literature DB >> 9390403

Measurement of diffusion constants for nucleic acids by NMR.

J Lapham1, J P Rife, P B Moore, D M Crothers.   

Abstract

Pulsed field-gradient NMR experiments can be used to measure the diffusion constants of nucleic acids. The diffusion constants measured in this way for double-helical DNAs of defined length agree well both with theory and with measurements done using other techniques. When applied to RNAs, this experiment easily distinguishes duplex RNAs from RNA hairpins and thus it can solve one of the perennial problems faced by RNA spectroscopists, i.e. assessing whether their samples are monomeric or not.

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Year:  1997        PMID: 9390403     DOI: 10.1023/a:1018310702909

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops.

Authors:  H A Heus; A Pardi
Journal:  Science       Date:  1991-07-12       Impact factor: 47.728

2.  Distinguishing between duplex and hairpin forms of RNA by 15N-1H heteronuclear NMR.

Authors:  F Aboul-ela; E P Nikonowicz; A Pardi
Journal:  FEBS Lett       Date:  1994-06-27       Impact factor: 4.124

3.  Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves.

Authors:  L A Marky; K J Breslauer
Journal:  Biopolymers       Date:  1987-09       Impact factor: 2.505

4.  Refinement of the structure of B-DNA and implications for the analysis of x-ray diffraction data from fibers of biopolymers.

Authors:  S Arnott; D W Hukins
Journal:  J Mol Biol       Date:  1973-12-05       Impact factor: 5.469

5.  Optimised parameters for A-DNA and B-DNA.

Authors:  S Arnott; D W Hukins
Journal:  Biochem Biophys Res Commun       Date:  1972-06-28       Impact factor: 3.575

6.  The dimensions of DNA in solution.

Authors:  M Mandelkern; J G Elias; D Eden; D M Crothers
Journal:  J Mol Biol       Date:  1981-10-15       Impact factor: 5.469

7.  Characterization of the overall and internal dynamics of short oligonucleotides by depolarized dynamic light scattering and NMR relaxation measurements.

Authors:  W Eimer; J R Williamson; S G Boxer; R Pecora
Journal:  Biochemistry       Date:  1990-01-23       Impact factor: 3.162

8.  Measuring protein self-association using pulsed-field-gradient NMR spectroscopy: application to myosin light chain 2.

Authors:  A J Dingley; J P Mackay; B E Chapman; M B Morris; P W Kuchel; B D Hambly; G F King
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Novel DNA superstructures formed by telomere-like oligomers.

Authors:  D Sen; W Gilbert
Journal:  Biochemistry       Date:  1992-01-14       Impact factor: 3.162

10.  Effects of different cations on the hydrodynamic radius of DNA.

Authors:  B S Fujimoto; J M Miller; N S Ribeiro; J M Schurr
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

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  26 in total

1.  Structure of the phylogenetically most conserved domain of SRP RNA.

Authors:  U Schmitz; S Behrens; D M Freymann; R J Keenan; P Lukavsky; P Walter; T L James
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17.

Authors:  L Varani; M Hasegawa; M G Spillantini; M J Smith; J R Murrell; B Ghetti; A Klug; M Goedert; G Varani
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

3.  Peptide self-association in aqueous trifluoroethanol monitored by pulsed field gradient NMR diffusion measurements.

Authors:  S Yao; G J Howlett; R S Norton
Journal:  J Biomol NMR       Date:  2000-02       Impact factor: 2.835

4.  NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop.

Authors:  U Nagaswamy; X Gao; S A Martinis; G E Fox
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

5.  Calculation of hydrodynamic properties of small nucleic acids from their atomic structure.

Authors:  M X Fernandes; A Ortega; M C López Martínez; J García de la Torre
Journal:  Nucleic Acids Res       Date:  2002-04-15       Impact factor: 16.971

6.  Mutations in the B1 domain of protein G that delay the onset of amyloid fibril formation in vitro.

Authors:  Marina Ramírez-Alvarado; Melanie J Cocco; Lynne Regan
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

7.  Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics.

Authors:  L Varani; M G Spillantini; M Goedert; G Varani
Journal:  Nucleic Acids Res       Date:  2000-02-01       Impact factor: 16.971

8.  Flexibility in HIV-1 assembly subunits: solution structure of the monomeric C-terminal domain of the capsid protein.

Authors:  Luis A Alcaraz; Marta del Alamo; Francisco N Barrera; Mauricio G Mateu; José L Neira
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

9.  Modelling toehold-mediated RNA strand displacement.

Authors:  Petr Šulc; Thomas E Ouldridge; Flavio Romano; Jonathan P K Doye; Ard A Louis
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

10.  Specific interactions of distamycin with G-quadruplex DNA.

Authors:  Melanie J Cocco; L A Hanakahi; Michael D Huber; Nancy Maizels
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

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