Literature DB >> 9380523

A rapid method for chromatin structure analysis in the filamentous fungus Aspergillus nidulans.

R Gonzalez1, C Scazzocchio.   

Abstract

A rapid method for nuclease digestion of Aspergillus nidulans chromatin is described. It overcomes the need for nuclear purification or protoplast preparation. The method is valid for the analysis of the nucleosomal repeat length in bulk chromatin, and allows the analysis of nucleosome phasing at a specific locus.

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Year:  1997        PMID： 9380523      PMCID： PMC146971          DOI： 10.1093/nar/25.19.3955

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  A simpler and better method to cleave chromatin with DNase 1 for hypersensitive site analyses.

Authors:  A F Stewart; A Reik; G Schütz
Journal:  Nucleic Acids Res       Date:  1991-06-11       Impact factor: 16.971

2.  The integration of nitrogen and carbon catabolite repression in Aspergillus nidulans requires the GATA factor AreA and an additional positive-acting element, ADA.

Authors:  R Gonzalez; V Gavrias; D Gomez; C Scazzocchio; B Cubero
Journal:  EMBO J       Date:  1997-05-15       Impact factor: 11.598

3.  DNase I hypersensitive sites within the inducible qa gene cluster of Neurospora crassa.

Authors:  J A Baum; N H Giles
Journal:  Proc Natl Acad Sci U S A       Date:  1986-09       Impact factor: 11.205

4.  Sequence and regulation of the uapA gene encoding a uric acid-xanthine permease in the fungus Aspergillus nidulans.

Authors:  L Gorfinkiel; G Diallinas; C Scazzocchio
Journal:  J Biol Chem       Date:  1993-11-05       Impact factor: 5.157

5.  The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

Authors:  C Wu
Journal:  Nature       Date:  1980-08-28       Impact factor: 49.962

6.  Genetic control of chromatin structure 5' to the qa-x and qa-2 genes of Neurospora.

Authors:  J A Baum; N H Giles
Journal:  J Mol Biol       Date:  1985-03-05       Impact factor: 5.469

7.  The unique histone H2A gene of Aspergillus nidulans contains three introns.

Authors:  G S May; N R Morris
Journal:  Gene       Date:  1987       Impact factor: 3.688

8.  Sequence, organization and expression of the core histone genes of Aspergillus nidulans.

Authors:  A Ehinger; S H Denison; G S May
Journal:  Mol Gen Genet       Date:  1990-07

9.  Differences and similarities in chromatin structure of Neurospora crassa and higher eucaryotes.

Authors:  M Noll
Journal:  Cell       Date:  1976-07       Impact factor: 41.582

10.  Chemical footprinting of 5S RNA chromatin in embryos of Drosophila melanogaster.

Authors:  I L Cartwright; S C Elgin
Journal:  EMBO J       Date:  1984-12-20       Impact factor: 11.598
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  15 in total

1.  The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter.

Authors:  M I Muro-Pastor; R Gonzalez; J Strauss; F Narendja; C Scazzocchio
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

2.  A paradoxical mutant GATA factor.

Authors:  M Isabel Muro-Pastor; Joseph Strauss; Ana Ramón; Claudio Scazzocchio
Journal:  Eukaryot Cell       Date:  2004-04

3.  Chromatin rearrangements in the prnD-prnB bidirectional promoter: dependence on transcription factors.

Authors:  Irene García; Ramón Gonzalez; Dennis Gómez; Claudio Scazzocchio
Journal:  Eukaryot Cell       Date:  2004-02

4.  Histone H1 Is required for proper regulation of pyruvate decarboxylase gene expression in Neurospora crassa.

Authors:  H Diego Folco; Michael Freitag; Ana Ramón; Esteban D Temporini; María E Alvarez; Irene García; Claudio Scazzocchio; Eric U Selker; Alberto L Rosa
Journal:  Eukaryot Cell       Date:  2003-04

Review 5.  Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping.

Authors:  Lilien N Voong; Liqun Xi; Ji-Ping Wang; Xiaozhong Wang
Journal:  Trends Genet       Date:  2017-07-07       Impact factor: 11.639

6.  AnCF, the CCAAT binding complex of Aspergillus nidulans, is essential for the formation of a DNase I-hypersensitive site in the 5' region of the amdS gene.

Authors:  F M Narendja; M A Davis; M J Hynes
Journal:  Mol Cell Biol       Date:  1999-10       Impact factor: 4.272

7.  Transcriptional regulation of xyn2 in Hypocrea jecorina.

Authors:  Elisabeth Würleitner; Licia Pera; Christian Wacenovsky; Angela Cziferszky; Susanne Zeilinger; Christian P Kubicek; Robert L Mach
Journal:  Eukaryot Cell       Date:  2003-02

8.  Genome-wide maps of mononucleosomes and dinucleosomes containing hyperacetylated histones of Aspergillus fumigatus.

Authors:  Hiromi Nishida; Takayuki Motoyama; Yutaka Suzuki; Shogo Yamamoto; Hiroyuki Aburatani; Hiroyuki Osada
Journal:  PLoS One       Date:  2010-03-26       Impact factor: 3.240

9.  Nucleosome positioning and histone H3 acetylation are independent processes in the Aspergillus nidulans prnD-prnB bidirectional promoter.

Authors:  Yazmid Reyes-Dominguez; Frank Narendja; Harald Berger; Andreas Gallmetzer; Rafael Fernandez-Martin; Irene Garcia; Claudio Scazzocchio; Joseph Strauss
Journal:  Eukaryot Cell       Date:  2008-02-22

10.  Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction.

Authors:  S Zeilinger; M Schmoll; M Pail; R L Mach; C P Kubicek
Journal:  Mol Genet Genomics       Date:  2003-08-02       Impact factor: 3.291
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