Literature DB >> 9360607

Helix packing angle preferences.

J U Bowie1.   

Abstract

The distribution of interaxial angles between packed alpha-helices has been explained by a number of elegant models describing how side chains on helices can interdigitate without steric conflicts. Here I show that much of the apparent preference for particular angles is due to statistical bias and that true packing angle preferences are not well described by regular packing models.

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Year:  1997        PMID: 9360607     DOI: 10.1038/nsb1197-915

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  29 in total

1.  Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association.

Authors:  M M Javadpour; M Eilers; M Groesbeek; S O Smith
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  Mechanics and dynamics of B1 domain of protein G: role of packing and surface hydrophobic residues.

Authors:  M A Ceruso; A Amadei; A Di Nola
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

3.  Constraint-based assembly of tertiary protein structures from secondary structure elements.

Authors:  K Yue; K A Dill
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

4.  Structural models of the MscL gating mechanism.

Authors:  S Sukharev; S R Durell; H R Guy
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

5.  Fold prediction of helical proteins using torsion angle dynamics and predicted restraints.

Authors:  Chao Zhang; Jingtong Hou; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

6.  Mapping the energy surface of transmembrane helix-helix interactions.

Authors:  J Torres; A Kukol; I T Arkin
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

7.  Calculation of rigid-body conformational changes using restraint-driven Cartesian transformations.

Authors:  P Sompornpisut; Y S Liu; E Perozo
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

8.  An improved hydrogen bond potential: impact on medium resolution protein structures.

Authors:  Felcy Fabiola; Richard Bertram; Andrei Korostelev; Michael S Chapman
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

9.  Comparison of helix interactions in membrane and soluble alpha-bundle proteins.

Authors:  Markus Eilers; Ashish B Patel; Wei Liu; Steven O Smith
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

10.  Discovery of a significant, nontopological preference for antiparallel alignment of helices with parallel regions in sheets.

Authors:  Brandon M Hespenheide; Leslie A Kuhn
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

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