Literature DB >> 9350736

Quantification of human immunodeficiency virus type 1 RNA from dried plasma spots collected on filter paper.

S Cassol1, M J Gill, R Pilon, M Cormier, R F Voigt, B Willoughby, J Forbes.   

Abstract

To assess dried plasma spots (DPSs) as a source of material for virus quantification, human immunodeficiency virus type 1 (HIV-1) RNA levels were quantified in matched DPS and liquid plasma samples from 73 infected patients, including 5 neonates and 4 adult patients with acute HIV-1 infection. Quantifications were performed by commercially available assays (NASBA [nucleic acid sequence-based amplification] or Amplicor, or both). There was a strong correlation between HIV-1 RNA levels in plasma and DPSs. More importantly, there was no decline in HIV-1 RNA levels in DPSs stored for as long as 2 weeks at 20 degrees C. Similarly, storage of DPSs for 3 days at 37 degrees C resulted in no decrease in viral RNA levels. For patients with primary infection, the DPS method allowed for the measurement of RNA levels in plasma during the initial spike in the level of viremia and in the subsequent period of suppressed viral replication. DPS quantification was equally informative in the neonatal setting, with all five newborns showing HIV-1 RNA loads of greater than 4.991 log10 copies/ml. We conclude that the viral RNA levels in DPSs are equivalent to those measured in fresh-frozen plasma. The ease and economy of DPS sampling, the minute volumes required, and the unexpected stability of dried RNA suggest that the use of DPSs will be particularly valuable for small-volume neonatal samples and large, population-based studies in which cold storage and transportation present special problems, as is often the case in developing countries. The ability to measure viral changes during primary infection suggests that the method will be useful for assessing vaccine efficacy in large field trials.

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Year:  1997        PMID: 9350736      PMCID: PMC230064          DOI: 10.1128/jcm.35.11.2795-2801.1997

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  33 in total

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2.  Qualitative and quantitative detection of HIV-1 RNA by nucleic acid sequence-based amplification.

Authors:  B van Gemen; T Kievits; P Nara; H G Huisman; S Jurriaans; J Goudsmit; P Lens
Journal:  AIDS       Date:  1993-11       Impact factor: 4.177

3.  Human immunodeficiency virus type 1 cellular RNA load and splicing patterns predict disease progression in a longitudinally studied cohort.

Authors:  N L Michael; T Mo; A Merzouki; M O'Shaughnessy; C Oster; D S Burke; R R Redfield; D L Birx; S A Cassol
Journal:  J Virol       Date:  1995-03       Impact factor: 5.103

4.  The natural history of HIV-1 infection: virus load and virus phenotype independent determinants of clinical course?

Authors:  S Jurriaans; B Van Gemen; G J Weverling; D Van Strijp; P Nara; R Coutinho; M Koot; H Schuitemaker; J Goudsmit
Journal:  Virology       Date:  1994-10       Impact factor: 3.616

5.  Viral measurement by polymerase chain reaction-based assays in human immunodeficiency virus-infected infants.

Authors:  P E Palumbo; S Kwok; S Waters; Y Wesley; D Lewis; N McKinney; A Bardeguez; E M Connor; J M Oleske
Journal:  J Pediatr       Date:  1995-04       Impact factor: 4.406

6.  High levels of HIV-1 in plasma during all stages of infection determined by competitive PCR.

Authors:  M Piatak; M S Saag; L C Yang; S J Clark; J C Kappes; K C Luk; B H Hahn; G M Shaw; J D Lifson
Journal:  Science       Date:  1993-03-19       Impact factor: 47.728

7.  Quantification of HIV-1 RNA in plasma using NASBA during HIV-1 primary infection.

Authors:  B van Gemen; T Kievits; R Schukkink; D van Strijp; L T Malek; R Sooknanan; H G Huisman; P Lens
Journal:  J Virol Methods       Date:  1993-07       Impact factor: 2.014

8.  Stability of dried blood spot specimens for detection of human immunodeficiency virus DNA by polymerase chain reaction.

Authors:  S Cassol; T Salas; M J Gill; M Montpetit; J Rudnik; C T Sy; M V O'Shaughnessy
Journal:  J Clin Microbiol       Date:  1992-12       Impact factor: 5.948

9.  Quantitation of HIV-1 RNA in plasma predicts outcome after seroconversion.

Authors:  J W Mellors; L A Kingsley; C R Rinaldo; J A Todd; B S Hoo; R P Kokka; P Gupta
Journal:  Ann Intern Med       Date:  1995-04-15       Impact factor: 25.391

10.  Viral dynamics in human immunodeficiency virus type 1 infection.

Authors:  X Wei; S K Ghosh; M E Taylor; V A Johnson; E A Emini; P Deutsch; J D Lifson; S Bonhoeffer; M A Nowak; B H Hahn
Journal:  Nature       Date:  1995-01-12       Impact factor: 49.962

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  44 in total

Review 1.  The use of the dried blood spot sample in epidemiological studies.

Authors:  S P Parker; W D Cubitt
Journal:  J Clin Pathol       Date:  1999-09       Impact factor: 3.411

Review 2.  Characteristics and applications of nucleic acid sequence-based amplification (NASBA).

Authors:  Birgit Deiman; Pierre van Aarle; Peter Sillekens
Journal:  Mol Biotechnol       Date:  2002-02       Impact factor: 2.695

3.  Molecular characteristics of human immunodeficiency virus type 1 subtype C viruses from KwaZulu-Natal, South Africa: implications for vaccine and antiretroviral control strategies.

Authors:  M Gordon; T De Oliveira; K Bishop; H M Coovadia; L Madurai; S Engelbrecht; E Janse van Rensburg; A Mosam; A Smith; S Cassol
Journal:  J Virol       Date:  2003-02       Impact factor: 5.103

4.  Simple and reliable method for detection and genotyping of hepatitis C virus RNA in dried blood spots stored at room temperature.

Authors:  Mariacarmela Solmone; Enrico Girardi; Francesco Costa; Leopoldo Pucillo; Giuseppe Ippolito; Maria R Capobianchi
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

5.  Chromatography paper strip method for collection, transportation, and storage of rotavirus RNA in stool samples.

Authors:  Mustafizur Rahman; Truus Goegebuer; Karolien De Leener; Piet Maes; Jelle Matthijnssens; Goutam Podder; Tasnim Azim; Marc Van Ranst
Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

6.  Feasibility of detecting human immunodeficiency virus type 1 drug resistance in DNA extracted from whole blood or dried blood spots.

Authors:  Kim Steegen; Stanley Luchters; Els Demecheleer; Kenny Dauwe; Kishor Mandaliya; Walter Jaoko; Jean Plum; Marleen Temmerman; Chris Verhofstede
Journal:  J Clin Microbiol       Date:  2007-08-01       Impact factor: 5.948

7.  Use of dried spots of whole blood, plasma, and mother's milk collected on filter paper for measurement of human immunodeficiency virus type 1 burden.

Authors:  Workenesh Ayele; Rob Schuurman; Tsehaynesh Messele; Wendelien Dorigo-Zetsma; Yohannes Mengistu; Jaap Goudsmit; William A Paxton; Michel P de Baar; Georgios Pollakis
Journal:  J Clin Microbiol       Date:  2007-01-24       Impact factor: 5.948

8.  Multicenter evaluation of use of dried blood and plasma spot specimens in quantitative assays for human immunodeficiency virus RNA: measurement, precision, and RNA stability.

Authors:  Don Brambilla; Cheryl Jennings; Grace Aldrovandi; James Bremer; Anne Marie Comeau; Sharon A Cassol; Ruth Dickover; J Brooks Jackson; Jane Pitt; John L Sullivan; Ann Butcher; Lynell Grosso; Patricia Reichelderfer; Susan A Fiscus
Journal:  J Clin Microbiol       Date:  2003-05       Impact factor: 5.948

9.  Overseas processing of dried blood spots for timely diagnosis of HIV in Haitian infants.

Authors:  Louise C Ivers; Mary Catherine Smith Fawzi; Julie Mann; Jean-Gregory Jerome; Maxi Raymonville; Joia S Mukherjee
Journal:  Rev Panam Salud Publica       Date:  2008-11

10.  Infant feeding, HIV transmission and mortality at 18 months: the need for appropriate choices by mothers and prioritization within programmes.

Authors:  Nigel C Rollins; Renaud Becquet; Ruth M Bland; Anna Coutsoudis; Hoosen M Coovadia; Marie-Louise Newell
Journal:  AIDS       Date:  2008-11-12       Impact factor: 4.177

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