Literature DB >> 9327396

Methods for the analysis of DNA-protein interactions.

M J Guille1, G G Kneale.   

Abstract

The interaction of proteins with DNA is a central theme of molecular biology. In this article, we review some of the principal techniques currently used for the identification and characterization of DNA binding proteins, and for investigation of the molecular interactions that are responsible for the recognition of specific DNA sequences.

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Year:  1997        PMID: 9327396     DOI: 10.1007/BF02762338

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  59 in total

1.  Primer extension analysis of mRNA isolated from transfected cell lines.

Authors:  M W Leonard; R K Patient
Journal:  Methods Mol Biol       Date:  1991

2.  High resolution footprinting of a type I methyltransferase reveals a large structural distortion within the DNA recognition site.

Authors:  D R Mernagh; G G Kneale
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

3.  Hydroxyl radical interference: a new method for the study of protein-DNA interactions.

Authors:  G Chalepakis; M Beato
Journal:  Nucleic Acids Res       Date:  1989-02-25       Impact factor: 16.971

4.  Probing the domain structure of the type IC DNA methyltransferase M.EcoR124I by limited proteolysis.

Authors:  M Webb; I A Taylor; K Firman; G G Kneale
Journal:  J Mol Biol       Date:  1995-07-07       Impact factor: 5.469

5.  Substrate recognition and selectivity in the type IC DNA modification methylase M.EcoR124I.

Authors:  I Taylor; D Watts; G Kneale
Journal:  Nucleic Acids Res       Date:  1993-10-25       Impact factor: 16.971

6.  Surface labelling of the type I methyltransferase M.EcoR124I reveals lysine residues critical for DNA binding.

Authors:  I A Taylor; M Webb; G G Kneale
Journal:  J Mol Biol       Date:  1996-04-26       Impact factor: 5.469

7.  The missing nucleoside experiment: a new technique to study recognition of DNA by protein.

Authors:  J J Hayes; T D Tullius
Journal:  Biochemistry       Date:  1989-11-28       Impact factor: 3.162

Review 8.  Insertional mutagenesis in transgenic mice.

Authors:  T Rijkers; A Peetz; U Rüther
Journal:  Transgenic Res       Date:  1994-07       Impact factor: 2.788

9.  Evidence for a stem cell-specific repressor of Moloney murine leukemia virus expression in embryonal carcinoma cells.

Authors:  T P Loh; L L Sievert; R W Scott
Journal:  Mol Cell Biol       Date:  1990-08       Impact factor: 4.272

10.  Identification and purification of a polypeptide that binds to the c-fos serum response element.

Authors:  R Treisman
Journal:  EMBO J       Date:  1987-09       Impact factor: 11.598

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  9 in total

Review 1.  Methods for the analysis of protein-chromatin interactions.

Authors:  Sarah J Brickwood; Fiona A Myers; Simon P Chandler
Journal:  Mol Biotechnol       Date:  2002-01       Impact factor: 2.695

2.  OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth.

Authors:  Jun Chen; Wei-Hua Tang; Meng-Min Hong; Zong-Yang Wang
Journal:  Plant Mol Biol       Date:  2003-06       Impact factor: 4.076

Review 3.  DNA-protein interactions: methods for detection and analysis.

Authors:  Bipasha Dey; Sameer Thukral; Shruti Krishnan; Mainak Chakrobarty; Sahil Gupta; Chanchal Manghani; Vibha Rani
Journal:  Mol Cell Biochem       Date:  2012-03-08       Impact factor: 3.396

4.  Transcription factor HIF1A: downstream targets, associated pathways, polymorphic hypoxia response element (HRE) sites, and initiative for standardization of reporting in scientific literature.

Authors:  Lucija Slemc; Tanja Kunej
Journal:  Tumour Biol       Date:  2016-09-19

5.  A fast algorithm for the construction of universal footprinting templates in DNA.

Authors:  James W Anderson; Keith R Fox; Graham A Niblo
Journal:  J Math Biol       Date:  2005-11-21       Impact factor: 2.164

6.  Affinity-based enrichment strategies to assay methyl-CpG binding activity and DNA methylation in early Xenopus embryos.

Authors:  Ozren Bogdanović; Gert Jan C Veenstra
Journal:  BMC Res Notes       Date:  2011-08-18

7.  Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction.

Authors:  Shawn M Christensen; Arkadiusz Bibillo; Thomas H Eickbush
Journal:  Nucleic Acids Res       Date:  2005-11-10       Impact factor: 16.971

8.  Space-induced bifurcation in repression-based transcriptional circuits.

Authors:  Amanda Lo Van; Hedi A Soula; Hugues Berry
Journal:  BMC Syst Biol       Date:  2014-11-08

Review 9.  DNA-protein interaction studies: a historical and comparative analysis.

Authors:  Ricardo André Campos Ferraz; Ana Lúcia Gonçalves Lopes; Jessy Ariana Faria da Silva; Diana Filipa Viana Moreira; Maria João Nogueira Ferreira; Sílvia Vieira de Almeida Coimbra
Journal:  Plant Methods       Date:  2021-07-23       Impact factor: 4.993

  9 in total

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