Literature DB >> 9299353

The effect of point mutations on the free energy of transmembrane alpha-helix dimerization.

K G Fleming1, A L Ackerman, D M Engelman.   

Abstract

Glycophorin A forms homodimers through interaction of the single, helical transmembrane domains of the monomers. The dimers are stable in sodium dodecylsulfate (SDS), permitting a number of studies that have identified a critical motif of residues that mediates dimer formation. We have used analytical ultracentrifugation to measure the energy of dimerization in a non-denaturing detergent solution and have observed the changes in energy arising from two of the mutants previously studied. Use of the detergent pentaoxyethylene octyl ether (C8E5) is a great advantage, since its micelles are neutrally buoyant and the detergent allows a reversible association to occur between monomer and dimer states of the glycophorin A transmembrane helices during the time-scale of sedimentation equilibrium. Use of this detergent in analytical ultracentrifugation may enable a wide range of studies of molecular association events in membrane proteins. We find that the glycophorin A transmembrane helix dimerizes with a dissociation constant of 240(+/-50) nM, corresponding to a free energy of dissociation of 9.0(+/-0.1) kcal mol-1. Point mutants that were found to be disruptive in SDS (L75A, I76A) reduced the dimer affinity in the C8E5 detergent environment (Kd=1.7(+/-0.2) microM and 4.2(+/-0.9) microM, respectively). Thus, the earlier findings are placed on a quantitative, relative energy scale of association by our measurements. Molecular modeling and simulations suggest that the energy differences can be accounted for as changes in van der Waals interactions between helices. Copyright 1997 Academic Press Limited.

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Year:  1997        PMID: 9299353     DOI: 10.1006/jmbi.1997.1236

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  81 in total

1.  Internal packing of helical membrane proteins.

Authors:  M Eilers; S C Shekar; T Shieh; S O Smith; P J Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

2.  pH-dependent tetramerization and amantadine binding of the transmembrane helix of M2 from the influenza A virus.

Authors:  D Salom; B R Hill; J D Lear; W F DeGrado
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

3.  Specificity in transmembrane helix-helix interactions can define a hierarchy of stability for sequence variants.

Authors:  K G Fleming; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

Review 4.  Modern analytical ultracentrifugation in protein science: a tutorial review.

Authors:  Jacob Lebowitz; Marc S Lewis; Peter Schuck
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

5.  Membrane peptides and their role in protobiological evolution.

Authors:  Andrew Pohorille; Michael A Wilson; Christophe Chipot
Journal:  Orig Life Evol Biosph       Date:  2003-04       Impact factor: 1.950

Review 6.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

7.  Cooperativity and specificity of association of a designed transmembrane peptide.

Authors:  Holly Gratkowski; Qing-Hong Dai; A Joshua Wand; William F DeGrado; James D Lear
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

8.  Quantification of helix-helix binding affinities in micelles and lipid bilayers.

Authors:  Andrei L Lomize; I D Pogozheva; H I Mosberg
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

9.  Membrane proteins: a new method enters the fold.

Authors:  James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-15       Impact factor: 11.205

10.  Engineering rotor ring stoichiometries in the ATP synthase.

Authors:  Denys Pogoryelov; Adriana L Klyszejko; Ganna O Krasnoselska; Eva-Maria Heller; Vanessa Leone; Julian D Langer; Janet Vonck; Daniel J Müller; José D Faraldo-Gómez; Thomas Meier
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-24       Impact factor: 11.205

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