Literature DB >> 9258689

Phylogeographic structure of white oaks throughout the European continent.

S Dumolin-Lapègue1, B Demesure, S Fineschi, V Le Corre, R J Petit.   

Abstract

Patterns of chloroplast DNA (cpDNA) variation were studied in eight white oak species by sampling 345 populations throughout Europe. The detection of polymorphisms by restriction analysis of PCR-amplified cpDNA fragments allowed the identification of 23 haplotypes that were phylogenetically ordered. A systematic hybridization and introgression between the eight species studied is evident. The levels of subdivision for unordered (GST) and ordered (NST) alleles are very high and close (0.83 and 0.85). A new statistical approach to the quantitative study of phylogeography is presented, which relies on the coefficients of differentiation GST and NST and the Mantel's test. Based on pairwise comparisons between populations, the significance of the difference between both coefficients is evaluated at a global and a local scale. The mapped distribution of the haplotypes indicates the probable routes of postglacial recolonization followed by oak populations that had persisted in southern refugia, especially in the Iberian peninsula, Italy and the Balkans. Most cpDNA polymorphisms appear to be anterior to the beginning of the last recolonization. A subset of the preexisting haplotypes have merely expanded north, while others were left behind in the south.

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Year:  1997        PMID: 9258689      PMCID: PMC1208090     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  13 in total

1.  Interspecific gene flow in sympatric oaks.

Authors:  A T Whittemore; B A Schaal
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

2.  Universal primers for amplification of three non-coding regions of chloroplast DNA.

Authors:  P Taberlet; L Gielly; G Pautou; J Bouvet
Journal:  Plant Mol Biol       Date:  1991-11       Impact factor: 4.076

3.  Chloroplast DNA phylogeography of the argan tree of Morocco.

Authors:  A el Mousadik; R J Petit
Journal:  Mol Ecol       Date:  1996-08       Impact factor: 6.185

4.  Measuring and testing genetic differentiation with ordered versus unordered alleles.

Authors:  O Pons; R J Petit
Journal:  Genetics       Date:  1996-11       Impact factor: 4.562

5.  An enlarged set of consensus primers for the study of organelle DNA in plants.

Authors:  S Dumolin-Lapegue; M H Pemonge; R J Petit
Journal:  Mol Ecol       Date:  1997-04       Impact factor: 6.185

6.  Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

Authors:  K H Wolfe; W H Li; P M Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

7.  A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants.

Authors:  B Demesure; N Sodzi; R J Petit
Journal:  Mol Ecol       Date:  1995-02       Impact factor: 6.185

8.  Native oak chloroplasts reveal an ancient divide across Europe.

Authors:  C Ferris; R P Oliver; A J Davy; G M Hewitt
Journal:  Mol Ecol       Date:  1993-12       Impact factor: 6.185

9.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

10.  Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum.

Authors:  A R Templeton; E Routman; C A Phillips
Journal:  Genetics       Date:  1995-06       Impact factor: 4.562

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  49 in total

1.  Gene genealogies and population variation in plants.

Authors:  B A Schaal; K M Olsen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Novel perspectives in wood certification and forensics: dry wood as a source of DNA.

Authors:  Marie-France Deguilloux; Marie-Hélène Pemonge; Rémy J Petit
Journal:  Proc Biol Sci       Date:  2002-05-22       Impact factor: 5.349

3.  Wind-dispersed pollen mediates postglacial gene flow among refugia.

Authors:  Sascha Liepelt; Ronald Bialozyt; Birgit Ziegenhagen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

4.  Phylogeography of the component species of broad-leaved evergreen forests in Japan, based on chloroplast DNA variation.

Authors:  Kyoko Aoki; Takeshi Suzuki; Tsai-Wen Hsu; Noriaki Murakami
Journal:  J Plant Res       Date:  2004-01-10       Impact factor: 2.629

5.  DNA fingerprinting in botany: past, present, future.

Authors:  Hilde Nybom; Kurt Weising; Björn Rotter
Journal:  Investig Genet       Date:  2014-01-03

6.  Abundant mitochondrial genome diversity, population differentiation and convergent evolution in pines.

Authors:  J Wu; K V Krutovskii; S H Strauss
Journal:  Genetics       Date:  1998-12       Impact factor: 4.562

7.  Mediterranean Europe as an area of endemism for small mammals rather than a source for northwards postglacial colonization.

Authors:  D T Bilton; P M Mirol; S Mascheretti; K Fredga; J Zima; J B Searle
Journal:  Proc Biol Sci       Date:  1998-07-07       Impact factor: 5.349

8.  High nuclear genetic diversity, high levels of outcrossing and low differentiation among remnant populations of Quercus petraea at the margin of its range in Ireland.

Authors:  Graham Muir; Andrew J Lowe; Colin C Fleming; Claus Vogl
Journal:  Ann Bot       Date:  2004-04-21       Impact factor: 4.357

9.  Host niches and defensive extended phenotypes structure parasitoid wasp communities.

Authors:  Richard Bailey; Karsten Schönrogge; James M Cook; George Melika; György Csóka; Csaba Thuróczy; Graham N Stone
Journal:  PLoS Biol       Date:  2009-08-25       Impact factor: 8.029

10.  Patterns of contemporary hybridization inferred from paternity analysis in a four-oak-species forest.

Authors:  Alexandru L Curtu; Oliver Gailing; Reiner Finkeldey
Journal:  BMC Evol Biol       Date:  2009-12-07       Impact factor: 3.260

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