Literature DB >> 9255943

The effect of ring currents on carbon chemical shifts in cytochromes.

L Blanchard1, C N Hunter, M P Williamson.   

Abstract

Calculations suggest that some carbon chemical shifts in proteins should have large ring current shifts (> 1 ppm). We present 13C, 15N and 1H assignments for cytochrome C2 from Rhodospirillum rubrum, compare these with shifts for other cytochromes c, and show that the calculated ring current shifts are similar to experimentally observed shifts, but that there remain substantial conformation-dependent shifts of side-chain carbons. Ring current shifts as large as 6 ppm are observed. We show that the ring current effects do not seriously affect the Chemical Shift Index method for delineating secondary structure, but may have an impact on more precise methods for generating structural constraints.

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Year:  1997        PMID: 9255943     DOI: 10.1023/a:1018394410613

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  A method for the calculation of protein alpha-CH chemical shifts.

Authors:  M P Williamson; T Asakura; E Nakamura; M Demura
Journal:  J Biomol NMR       Date:  1992-01       Impact factor: 2.835

2.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

Review 3.  Chemical shifts as a tool for structure determination.

Authors:  D S Wishart; B D Sykes
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

4.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

5.  NMR comparison of prokaryotic and eukaryotic cytochromes c.

Authors:  M H Chau; M L Cai; R Timkovich
Journal:  Biochemistry       Date:  1990-05-29       Impact factor: 3.162

6.  Assignment of the 13C and 13CO resonances for Rhodobacter capsulatus ferrocytochrome c2 using double-resonance and triple-resonance NMR spectroscopy.

Authors:  M Caffrey; B Brutscher; J P Simorre; J Fitch; M Cusanovich; D Marion
Journal:  Eur J Biochem       Date:  1994-04-01

7.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

8.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

9.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

10.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

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  5 in total

1.  Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications.

Authors:  Liya Wang; Hamid R Eghbalnia; Arash Bahrami; John L Markley
Journal:  J Biomol NMR       Date:  2005-05       Impact factor: 2.835

2.  C alpha and C beta carbon-13 chemical shifts in proteins from an empirical database.

Authors:  M Iwadate; T Asakura; M P Williamson
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

3.  GENFOLD: a genetic algorithm for folding protein structures using NMR restraints.

Authors:  M J Bayley; G Jones; P Willett; M P Williamson
Journal:  Protein Sci       Date:  1998-02       Impact factor: 6.725

4.  Heteronuclear 2D (1H-13C) MAS NMR resolves the electronic structure of coordinated histidines in light-harvesting complex II: assessment of charge transfer and electronic delocalization effect.

Authors:  Jörg Matysik; Ido de Boer; Peter Gast; Hans J van Gorkom; Huub J M de Groot
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

5.  Why the Energy Landscape of Barnase Is Hierarchical.

Authors:  Maya J Pandya; Stefanie Schiffers; Andrea M Hounslow; Nicola J Baxter; Mike P Williamson
Journal:  Front Mol Biosci       Date:  2018-12-20
  5 in total

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