Literature DB >> 9241432

Site-specific dynamics in DNA: experiments.

B H Robinson1, C Mailer, G Drobny.   

Abstract

This chapter reviews the dynamics information obtained from experimental magnetic resonance studies of site-specifically labeled duplex DNA. A previous review (43) discusses the dynamics of duplex DNA; it develops a theory that shows how magnetic resonance experiments are used to detect those dynamics. The methods for obtaining information about dynamics as well as a summary of what is now known about the site-specific dynamics of DNA are presented. This review contains two methods sections which present results using electron paramagnetic resonance and nuclear magnetic resonance active probes.

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Year:  1997        PMID： 9241432     DOI： 10.1146/annurev.biophys.26.1.629

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN： 1056-8700


  12 in total

1.  Flexibility of duplex DNA on the submicrosecond timescale.

Authors:  T M Okonogi; A W Reese; S C Alley; P B Hopkins; B H Robinson
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Femtosecond dynamics of DNA-mediated electron transfer.

Authors:  C Wan; T Fiebig; S O Kelley; C R Treadway; J K Barton; A H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

3.  Observation of a distinct transition in the mode of interconversion of ring pucker conformers in non-crystalline d-ribose-2'-d from 2H NMR spin-alignment.

Authors:  Andy C LiWang; David E McCready; Gary P Drobny; Brian R Reid; Michael A Kennedy
Journal:  J Biomol NMR       Date:  2003-07       Impact factor: 2.835

4.  Effect of lesions on the dynamics of DNA on the picosecond and nanosecond timescales using a polarity sensitive probe.

Authors:  Mark M Somoza; Daniele Andreatta; Catherine J Murphy; Robert S Coleman; Mark A Berg
Journal:  Nucleic Acids Res       Date:  2004-05-06       Impact factor: 16.971

5.  Dynamic conformational states of DNA containing T.T or BrdU.T mispaired bases: wobble H-bond pairing versus cross-strand inter-atomic contacts.

Authors:  Tsvetan G Gantchev; Sylvain Cecchini; Darel J Hunting
Journal:  J Mol Model       Date:  2005-02-18       Impact factor: 1.810

Review 6.  Site-directed spin labeling studies on nucleic acid structure and dynamics.

Authors:  Glenna Z Sowa; Peter Z Qin
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2008

7.  Site-specific DNA structural and dynamic features revealed by nucleotide-independent nitroxide probes.

Authors:  Anna M Popova; Tamás Kálai; Kálmán Hideg; Peter Z Qin
Journal:  Biochemistry       Date:  2009-09-15       Impact factor: 3.162

8.  Simulating electron spin resonance spectra of nitroxide spin labels from molecular dynamics and stochastic trajectories.

Authors:  Deniz Sezer; Jack H Freed; Benoît Roux
Journal:  J Chem Phys       Date:  2008-04-28       Impact factor: 3.488

9.  Hidden in plain sight: subtle effects of the 8-oxoguanine lesion on the structure, dynamics, and thermodynamics of a 15-base pair oligodeoxynucleotide duplex.

Authors:  Charisse M Crenshaw; Jacqueline E Wade; Haribabu Arthanari; Dominique Frueh; Benjamin F Lane; Megan E Núñez
Journal:  Biochemistry       Date:  2011-09-08       Impact factor: 3.162

10.  Diastereomer characterizations of nitroxide-labeled nucleic acids.

Authors:  Gian Paola G Grant; Anna Popova; Peter Z Qin
Journal:  Biochem Biophys Res Commun       Date:  2008-04-28       Impact factor: 3.575
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