Literature DB >> 9241429

Use of surface plasmon resonance to probe the equilibrium and dynamic aspects of interactions between biological macromolecules.

P Schuck1.   

Abstract

Surface plasmon resonance biosensors have become increasingly popular for the qualitative and quantitative characterization of the specific binding of a mobile reactant to a binding partner immobilized on the sensor surface. This article reviews the use of this new technique to measure the binding affinities and the kinetic constants of reversible interactions between biological macromolecules. Immobilization techniques, the most commonly employed experimental strategies, and various analytical approaches are summarized. In recent years, several sources of potential artifacts have been identified: immobilization of the binding partner, steric hindrance of binding to adjacent binding sites at the sensor surface, and finite rate of mass transport of the mobile reactant to the sensor surface. Described here is the influence of these artifacts on the measured binding kinetics and equilibria, together with suggested control experiments.

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Year:  1997        PMID: 9241429     DOI: 10.1146/annurev.biophys.26.1.541

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  114 in total

1.  Mutants of ETS domain PU.1 and GGAA/T recognition: free energies and kinetics.

Authors:  F Pio; N Assa-Munt; J Yguerabide; R A Maki
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

2.  Resonant mirror biosensor analysis of type Ialpha cAMP-dependent protein kinase B domain--cyclic nucleotide interactions.

Authors:  W W Muhonen; J B Shabb
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

3.  Diffusion of microspheres in shear flow near a wall: use to measure binding rates between attached molecules.

Authors:  A Pierres; A M Benoliel; C Zhu; P Bongrand
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

4.  Use of fluorescence-detected sedimentation velocity to study high-affinity protein interactions.

Authors:  Sumit K Chaturvedi; Jia Ma; Huaying Zhao; Peter Schuck
Journal:  Nat Protoc       Date:  2017-08-03       Impact factor: 13.491

5.  Combined affinity and rate constant distributions of ligand populations from experimental surface binding kinetics and equilibria.

Authors:  Juraj Svitel; Andrea Balbo; Roy A Mariuzza; Noreen R Gonzales; Peter Schuck
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

6.  Epitope mapping for the monoclonal antibody that inhibits intramolecular electron transfer in flavocytochrome b2.

Authors:  K H Diêp Lê; Martine Mayer; Florence Lederer
Journal:  Biochem J       Date:  2003-07-01       Impact factor: 3.857

7.  Use of a biosensor to determine the binding kinetics of five lectins for Galactosyl-N-acetylgalactosamine.

Authors:  J D Milton; D G Fernig; J M Rhodes
Journal:  Glycoconj J       Date:  2001-07       Impact factor: 2.916

Review 8.  How do site-specific DNA-binding proteins find their targets?

Authors:  Stephen E Halford; John F Marko
Journal:  Nucleic Acids Res       Date:  2004-06-03       Impact factor: 16.971

9.  Analysis of heterogeneous interactions.

Authors:  James L Cole
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

10.  RNA polymerase can track a DNA groove during promoter search.

Authors:  Kumiko Sakata-Sogawa; Nobuo Shimamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-06       Impact factor: 11.205

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