Literature DB >> 9223259

Phylogenetics and the origin of species.

J C Avise1, K Wollenberg.   

Abstract

A recent criticism that the biological species concept (BSC) unduly neglects phylogeny is examined under a novel modification of coalescent theory that considers multiple, sex-defined genealogical pathways through sexual organismal pedigrees. A competing phylogenetic species concept (PSC) also is evaluated from this vantage. Two analytical approaches are employed to capture the composite phylogenetic information contained within the braided assemblages of hereditary pathways of a pedigree: (i) consensus phylogenetic trees across allelic transmission routes and (ii) composite phenograms from quantitative values of organismal coancestry. Outcomes from both approaches demonstrate that the supposed sharp distinction between biological and phylogenetic species concepts is illusory. Historical descent and reproductive ties are related aspects of phylogeny and jointly illuminate biotic discontinuity.

Mesh:

Year:  1997        PMID: 9223259      PMCID: PMC33696          DOI: 10.1073/pnas.94.15.7748

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Population growth makes waves in the distribution of pairwise genetic differences.

Authors:  A R Rogers; H Harpending
Journal:  Mol Biol Evol       Date:  1992-05       Impact factor: 16.240

2.  Inferences of species phylogeny in relation to segregation of ancient polymorphisms.

Authors:  C I Wu
Journal:  Genetics       Date:  1991-02       Impact factor: 4.562

Review 3.  Coalescents and genealogical structure under neutrality.

Authors:  P Donnelly; S Tavaré
Journal:  Annu Rev Genet       Date:  1995       Impact factor: 16.830

4.  A species definition for the modern synthesis.

Authors:  J Mallet
Journal:  Trends Ecol Evol       Date:  1995-07       Impact factor: 17.712

5.  Current versus historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations.

Authors:  J C Avise; R M Ball; J Arnold
Journal:  Mol Biol Evol       Date:  1988-07       Impact factor: 16.240

6.  Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution.

Authors:  P Marjoram; P Donnelly
Journal:  Genetics       Date:  1994-02       Impact factor: 4.562

7.  Multiple nuclear-gene phylogenies: application to pinnipeds and comparison with a mitochondrial DNA gene phylogeny.

Authors:  R W Slade; C Moritz; A Heideman
Journal:  Mol Biol Evol       Date:  1994-05       Impact factor: 16.240

8.  Gene genealogy and variance of interpopulational nucleotide differences.

Authors:  N Takahata; M Nei
Journal:  Genetics       Date:  1985-06       Impact factor: 4.562

9.  An approach to population and evolutionary genetic theory for genes in mitochondria and chloroplasts, and some results.

Authors:  C W Birky; T Maruyama; P Fuerst
Journal:  Genetics       Date:  1983-03       Impact factor: 4.562

10.  Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales.

Authors:  S R Palumbi; C S Baker
Journal:  Mol Biol Evol       Date:  1994-05       Impact factor: 16.240

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  41 in total

1.  Proposal for a standardized temporal scheme of biological classification for extant species.

Authors:  J C Avise; G C Johns
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  Molecular phylogenetic analyses of the mitochondrial ADP-ATP carriers: the Plantae/Fungi/Metazoa trichotomy revisited.

Authors:  A Löytynoja; M C Milinkovitch
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Incipient species formation in salamanders of the Ensatina complex.

Authors:  D B Wake
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

4.  Array Comparative Genomic Hybridizations: assessing the ability to recapture evolutionary relationships using an in silico approach.

Authors:  Luz B Gilbert; Lee Chae; Takao Kasuga; John W Taylor
Journal:  BMC Genomics       Date:  2011-09-21       Impact factor: 3.969

5.  The role of subspecies in obscuring avian biological diversity and misleading conservation policy.

Authors:  Robert M Zink
Journal:  Proc Biol Sci       Date:  2004-03-22       Impact factor: 5.349

Review 6.  Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi.

Authors:  John W Taylor; Elizabeth Turner; Jeffrey P Townsend; Jeremy R Dettman; David Jacobson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-11-29       Impact factor: 6.237

7.  Phylogeny of the cycads based on multiple single-copy nuclear genes: congruence of concatenated parsimony, likelihood and species tree inference methods.

Authors:  Dayana E Salas-Leiva; Alan W Meerow; Michael Calonje; M Patrick Griffith; Javier Francisco-Ortega; Kyoko Nakamura; Dennis W Stevenson; Carl E Lewis; Sandra Namoff
Journal:  Ann Bot       Date:  2013-08-29       Impact factor: 4.357

8.  Species realities and numbers in sexual vertebrates: perspectives from an asexually transmitted genome.

Authors:  J C Avise; D Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-02       Impact factor: 11.205

9.  Genetics and the origin of species: an introduction.

Authors:  F J Ayala; W M Fitch
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

10.  Phylogenetic relationships of varieties and geographical groups of the human pathogenic fungus Histoplasma capsulatum Darling.

Authors:  T Kasuga; J W Taylor; T J White
Journal:  J Clin Microbiol       Date:  1999-03       Impact factor: 5.948

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