Literature DB >> 9219246

Efficient preparation of single-stranded DNA for in vitro selection.

M J Kujau1, S Wölfl.   

Abstract

In vitro selection of aptamers requires the reliable enzymatic preparation of large amounts of (+) single-stranded DNA molecules. This can be achieved by selective enzymatic digest of 5'-phosphorylated (-) strands from PCR products, a method already widely used in sequencing of PCR products. Here we present an adaptation of this method to prepare large pools of single-stranded DNA molecules for in vitro selection.

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Year:  1997        PMID: 9219246     DOI: 10.1007/BF02740823

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  10 in total

1.  Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures.

Authors:  A D Ellington; J W Szostak
Journal:  Nature       Date:  1992-02-27       Impact factor: 49.962

2.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.

Authors:  C Tuerk; L Gold
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

3.  In vitro selection of RNA molecules that bind specific ligands.

Authors:  A D Ellington; J W Szostak
Journal:  Nature       Date:  1990-08-30       Impact factor: 49.962

4.  Selection of single-stranded DNA molecules that bind and inhibit human thrombin.

Authors:  L C Bock; L C Griffin; J A Latham; E H Vermaas; J J Toole
Journal:  Nature       Date:  1992-02-06       Impact factor: 49.962

5.  High-affinity ssDNA inhibitors of the reverse transcriptase of type 1 human immunodeficiency virus.

Authors:  D J Schneider; J Feigon; Z Hostomsky; L Gold
Journal:  Biochemistry       Date:  1995-07-25       Impact factor: 3.162

6.  Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus.

Authors:  U B Gyllensten; H A Erlich
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

7.  PCR product with strands of unequal length.

Authors:  K P Williams; D P Bartel
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

8.  A DNA aptamer that binds adenosine and ATP.

Authors:  D E Huizenga; J W Szostak
Journal:  Biochemistry       Date:  1995-01-17       Impact factor: 3.162

9.  A consensus sequence for binding of Lrp to DNA.

Authors:  Y Cui; Q Wang; G D Stormo; J M Calvo
Journal:  J Bacteriol       Date:  1995-09       Impact factor: 3.490

10.  An exonuclease induced by bacteriophage lambda. I. Preparation of the crystalline enzyme.

Authors:  J W Little; I R Lehman; A D Kaiser
Journal:  J Biol Chem       Date:  1967-02-25       Impact factor: 5.157

  10 in total
  6 in total

1.  Efficient Production of Single-Stranded Phage DNA as Scaffolds for DNA Origami.

Authors:  Benjamin Kick; Florian Praetorius; Hendrik Dietz; Dirk Weuster-Botz
Journal:  Nano Lett       Date:  2015-06-03       Impact factor: 11.189

Review 2.  Single-Stranded DNA Aptamers against Pathogens and Toxins: Identification and Biosensing Applications.

Authors:  Ka Lok Hong; Letha J Sooter
Journal:  Biomed Res Int       Date:  2015-06-23       Impact factor: 3.411

3.  Novel Strategies to Optimize the Amplification of Single-Stranded DNA.

Authors:  Atef Nehdi; Nosaibah Samman; Vanessa Aguilar-Sánchez; Azer Farah; Emre Yurdusev; Mohamed Boudjelal; Jonathan Perreault
Journal:  Front Bioeng Biotechnol       Date:  2020-05-05

Review 4.  Current and Emerging Methods for the Synthesis of Single-Stranded DNA.

Authors:  Min Hao; Jianjun Qiao; Hao Qi
Journal:  Genes (Basel)       Date:  2020-01-21       Impact factor: 4.096

5.  Rapid in vitro production of single-stranded DNA.

Authors:  Dionis Minev; Richard Guerra; Jocelyn Y Kishi; Cory Smith; Elisha Krieg; Khaled Said; Amanda Hornick; Hiroshi M Sasaki; Gabriel Filsinger; Brian J Beliveau; Peng Yin; George M Church; William M Shih
Journal:  Nucleic Acids Res       Date:  2019-12-16       Impact factor: 16.971

6.  Enzymatic synthesis of hypermodified DNA polymers for sequence-specific display of four different hydrophobic groups.

Authors:  Marek Ondruš; Veronika Sýkorová; Lucie Bednárová; Radek Pohl; Michal Hocek
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

  6 in total

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