Literature DB >> 9200604

The eucaryal tRNA splicing endonuclease recognizes a tripartite set of RNA elements.

E Di Nicola Negri1, S Fabbri, E Bufardeci, M I Baldi, D Gandini Attardi, E Mattoccia, G P Tocchini-Valentini.   

Abstract

The tRNA splicing endonuclease cleaves intron-containing tRNA precursors on both sides of the intron. The prevailing belief has been that the enzyme binds only to the mature domain through the invariant bases. We show instead that, for recognition, the endonuclease utilizes distinct sets of structural elements, several of which are within the intron. One subset of recognition elements, localized in the mature domain, is needed for recognition of both cleavage sites, while two other subsets, localized at the exon-intron boundaries, are used for recognition of either one or the other cleavage site. The two cleavage sites are essentially independent: neither is required by the other for cleavage to take place. These results support a two-active-site model for the eucaryal endonuclease.

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Year:  1997        PMID: 9200604     DOI: 10.1016/s0092-8674(00)80271-8

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  23 in total

1.  Cleavage of non-tRNA substrates by eukaryal tRNA splicing endonucleases.

Authors:  P Fruscoloni; M I Baldi; G P Tocchini-Valentini
Journal:  EMBO Rep       Date:  2001-03       Impact factor: 8.807

2.  Coevolution of tRNA intron motifs and tRNA endonuclease architecture in Archaea.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-12       Impact factor: 11.205

3.  Structure, function, and evolution of the tRNA endonucleases of Archaea: an example of subfunctionalization.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-03       Impact factor: 11.205

4.  Structural and mutational analysis of tRNA intron-splicing endonuclease from Thermoplasma acidophilum DSM 1728: catalytic mechanism of tRNA intron-splicing endonucleases.

Authors:  Young Kwan Kim; Kenji Mizutani; Kyung-Hee Rhee; Ki-Hyun Nam; Won Ho Lee; Eun Hye Lee; Eunice Eunkyeong Kim; Sam-Yong Park; Kwang Yeon Hwang
Journal:  J Bacteriol       Date:  2007-09-07       Impact factor: 3.490

5.  The dawn of dominance by the mature domain in tRNA splicing.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-16       Impact factor: 11.205

6.  Evolution of introns in the archaeal world.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

7.  A pre-tRNA carrying intron features typical of Archaea is spliced in yeast.

Authors:  Gianfranco Di Segni; Lodovica Borghese; Silvia Sebastiani; Glauco P Tocchini-Valentini
Journal:  RNA       Date:  2004-12-01       Impact factor: 4.942

8.  Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei.

Authors:  Mary Anne T Rubio; Zdeněk Paris; Kirk W Gaston; Ian M C Fleming; Paul Sample; Christopher R Trotta; Juan D Alfonzo
Journal:  Mol Cell       Date:  2013-10-03       Impact factor: 17.970

9.  Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells.

Authors:  Gianfranco Di Segni; Serena Gastaldi; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-05       Impact factor: 11.205

10.  Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease.

Authors:  Shigeo Yoshinari; Tomoo Shiba; Daniel-Ken Inaoka; Takashi Itoh; Genji Kurisu; Shigeharu Harada; Kiyoshi Kita; Yoh-ichi Watanabe
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

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