Literature DB >> 9196330

Strand asymmetries in DNA evolution.

M P Francino1, H Ochman.   

Abstract

The complementary strands of DNA differ with respect to replication and transcription. Both of these processes are asymmetric and can bias the occurrence of mutations between the strands: during replication, the discontinuous lagging strand undergoes certain errors at higher rates, and transcription overexposes the nontranscribed strand to DNA damage while targeting repair enzymes to the transcribed strand. While biases introduced during replication apparently have little impact on sequence evolution, the effects of transcription are observed in the asymmetric patterns of substitution in bacterial genes and might be influencing genome-wide patterns of base composition.

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Year:  1997        PMID: 9196330     DOI: 10.1016/S0168-9525(97)01118-9

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  89 in total

1.  Strand asymmetry and codon usage bias in the chloroplast genome of Euglena gracilis.

Authors:  B R Morton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

2.  The unusual gene organization of Leishmania major chromosome 1 may reflect novel transcription processes.

Authors:  P D McDonagh; P J Myler; K Stuart
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

3.  Mosaic structure of the DNA molecules of the human chromosomes 21 and 22.

Authors:  D Häring; J Kypr
Journal:  Mol Biol Rep       Date:  2001-03       Impact factor: 2.316

4.  How does replication-associated mutational pressure influence amino acid composition of proteins?

Authors:  A Gierlik; M Kowalczuk; M R Dudek; S Cebrat
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

5.  Hypermutation in derepressed operons of Escherichia coli K12.

Authors:  B E Wright; A Longacre; J M Reimers
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

6.  Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes.

Authors:  Jeremiah J Faith; David D Pollock
Journal:  Genetics       Date:  2003-10       Impact factor: 4.562

7.  Modeling DNA base substitution in large genomic regions from two organisms.

Authors:  Von Bing Yap; Terence P Speed
Journal:  J Mol Evol       Date:  2004-01       Impact factor: 2.395

8.  Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene.

Authors:  E A Worthey; Santiago Martinez-Calvillo; Achim Schnaufer; Gautam Aggarwal; Jason Cawthra; Gholam Fazelinia; Chris Fong; Guoliang Fu; Melissa Hassebrock; Greg Hixson; Alasdair C Ivens; Patti Kiser; Felicia Marsolini; Erika Rickel; Erica Rickell; Reza Salavati; Ellen Sisk; Susan M Sunkin; Kenneth D Stuart; Peter J Myler
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

9.  Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.

Authors:  Marie Touchon; Alain Arneodo; Yves d'Aubenton-Carafa; Claude Thermes
Journal:  Nucleic Acids Res       Date:  2004-09-23       Impact factor: 16.971

10.  Patterns of nucleotide substitution in Drosophila and mammalian genomes.

Authors:  D A Petrov; D L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

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