Literature DB >> 9194196

Characterization and crystallization of human uroporphyrinogen decarboxylase.

J D Phillips1, F G Whitby, J P Kushner, C P Hill.   

Abstract

The cytosolic enzyme uroporphyrinogen decarboxylase (URO-D) catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen to coproporphyrinogen by decarboxylating the four acetate side chains of the substrate. Recombinant human URO-D has been expressed in Escherichia coli with a histidine tag and has been purified to homogeneity. Purified protein was determined to be a monodisperse dimer by dynamic light scattering. Equilibrium sedimentation analysis confirmed that the protein is dimeric, with a dissociation constant of 0.1 microM. URO-D containing an amino-terminal histidine tag was crystallized in space group P3(1)21 or its enantiomer P3(2)21 with unit cell dimensions a = b = 103.6 A, c = 75.2 A. There is one molecule in the asymmetric unit, consistent with generation of the dimer by the twofold axis of this crystallographic operator. Native data have been collected to 3.0 a resolution.

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Year:  1997        PMID: 9194196      PMCID: PMC2143715          DOI: 10.1002/pro.5560060624

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  10 in total

1.  DETERMINATION OF STOICHIOMETRY AND EQUILIBRIUM CONSTANTS FOR REVERSIBLY ASSOCIATING SYSTEMS BY MOLECULAR SIEVE CHROMATOGRAPHY.

Authors:  G K ACKERS; T E THOMPSON
Journal:  Proc Natl Acad Sci U S A       Date:  1965-02       Impact factor: 11.205

2.  Molecular cloning and nucleotide sequence of a complete human uroporphyrinogen decarboxylase cDNA.

Authors:  P H Roméo; N Raich; A Dubart; D Beaupain; M Pryor; J Kushner; M Cohen-Solal; M Goossens
Journal:  J Biol Chem       Date:  1986-07-25       Impact factor: 5.157

3.  Studies on uroporphyrinogen decarboxylase of etiolated Euglena gracilis Z.

Authors:  A A Juknat; A Seubert; S Seubert; H Ippen
Journal:  Eur J Biochem       Date:  1989-02-01

4.  Uroporphyrinogen decarboxylase purification from chicken erythrocytes.

Authors:  Y Seki; S Kawanishi; S Sano
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Purification and properties of uroporphyrinogen decarboxylase from human erythrocytes. A single enzyme catalyzing the four sequential decarboxylations of uroporphyrinogens I and III.

Authors:  H de Verneuil; S Sassa; A Kappas
Journal:  J Biol Chem       Date:  1983-02-25       Impact factor: 5.157

7.  Mutational analysis of human uroporphyrinogen decarboxylase.

Authors:  E E Wyckoff; J D Phillips; A M Sowa; M R Franklin; J P Kushner
Journal:  Biochim Biophys Acta       Date:  1996-12-05

8.  Purification and characterization of bovine hepatic uroporphyrinogen decarboxylase.

Authors:  J G Straka; J P Kushner
Journal:  Biochemistry       Date:  1983-09-27       Impact factor: 3.162

9.  Purification of uroporphyrinogen decarboxylase from human erythrocytes. Immunochemical evidence for a single protein with decarboxylase activity in human erythrocytes and liver.

Authors:  G H Elder; J A Tovey; D M Sheppard
Journal:  Biochem J       Date:  1983-10-01       Impact factor: 3.857

10.  Uroporphyrinogen decarboxylase. A method for measuring enzyme activity.

Authors:  J G Straka; J P Kushner; M A Pryor
Journal:  Enzyme       Date:  1982
  10 in total
  10 in total

Review 1.  Heme biosynthesis and the porphyrias.

Authors:  John D Phillips
Journal:  Mol Genet Metab       Date:  2019-04-22       Impact factor: 4.797

2.  Crystal structure of human uroporphyrinogen decarboxylase.

Authors:  F G Whitby; J D Phillips; J P Kushner; C P Hill
Journal:  EMBO J       Date:  1998-05-01       Impact factor: 11.598

Review 3.  Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.

Authors:  Harry A Dailey; Tamara A Dailey; Svetlana Gerdes; Dieter Jahn; Martina Jahn; Mark R O'Brian; Martin J Warren
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-25       Impact factor: 11.056

4.  Crystal structure of uroporphyrinogen decarboxylase from Bacillus subtilis.

Authors:  Jun Fan; Qun Liu; Quan Hao; Maikun Teng; Liwen Niu
Journal:  J Bacteriol       Date:  2006-11-22       Impact factor: 3.490

5.  Structural basis for tetrapyrrole coordination by uroporphyrinogen decarboxylase.

Authors:  John D Phillips; Frank G Whitby; James P Kushner; Christopher P Hill
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

6.  Structural and kinetic characterization of mutant human uroporphyrinogen decarboxylases.

Authors:  C A Warby; J D Phillips; H A Bergonia; F G Whitby; C P Hill; J P Kushner
Journal:  Cell Mol Biol (Noisy-le-grand)       Date:  2009-07-01       Impact factor: 1.770

7.  Substrate shuttling between active sites of uroporphyrinogen decarboxylase is not required to generate coproporphyrinogen.

Authors:  John D Phillips; Christy A Warby; Frank G Whitby; James P Kushner; Christopher P Hill
Journal:  J Mol Biol       Date:  2009-04-10       Impact factor: 5.469

8.  Identification and characterization of novel uroporphyrinogen decarboxylase gene mutations in a large series of porphyria cutanea tarda patients and relatives.

Authors:  C Badenas; J To-Figueras; J D Phillips; C A Warby; C Muñoz; C Herrero
Journal:  Clin Genet       Date:  2009-04       Impact factor: 4.438

9.  A mouse model of familial porphyria cutanea tarda.

Authors:  J D Phillips; L K Jackson; M Bunting; M R Franklin; K R Thomas; J E Levy; N C Andrews; J P Kushner
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

10.  Uroporphyrinogen decarboxylase as a potential target for specific components of traditional Chinese medicine: a virtual screening and molecular dynamics study.

Authors:  Yung-An Tsou; Kuan-Chung Chen; Hung-Che Lin; Su-Sen Chang; Calvin Yu-Chian Chen
Journal:  PLoS One       Date:  2012-11-29       Impact factor: 3.240

  10 in total

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