Literature DB >> 9183536

End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.

A Rambaut1, P H Harvey, S Nee.   

Abstract

MOTIVATION: Phylogenetic trees constructed from molecular sequences contain information about the evolutionary or population dynamical processes that created them. Here we describe a computer package (End-Epi) that uses graphical methods to allow researchers to make inferences about these processes from their data. Statistical analyses can be performed to test the consistency of the data with various competing hypotheses. AVAILABILITY: End-Epi can be obtained by WWW from http://evolve.zoo.ox.ac.uk/ and by anonymous FTP from ftp://evolve.zoo.ox.ac.uk/packages/End-Epi10.hqx. This file contains the compiled application, the manual and a test tree.

Mesh：

Year:  1997        PMID： 9183536     DOI： 10.1093/bioinformatics/13.3.303

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  8 in total

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3.  Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae: Plethodon).

Authors:  Kenneth H Kozak; David W Weisrock; Allan Larson
Journal:  Proc Biol Sci       Date:  2006-03-07       Impact factor: 5.349

4.  Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders.

Authors:  John J Wiens; Gabriela Parra-Olea; Mario García-París; David B Wake
Journal:  Proc Biol Sci       Date:  2007-04-07       Impact factor: 5.349

5.  Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats.

Authors:  Emma C Teeling; Ole Madsen; Ronald A Van den Bussche; Wilfried W de Jong; Michael J Stanhope; Mark S Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

6.  The first molecular phylogeny of Strepsiptera (Insecta) reveals an early burst of molecular evolution correlated with the transition to endoparasitism.

Authors:  Dino P McMahon; Alexander Hayward; Jeyaraney Kathirithamby
Journal:  PLoS One       Date:  2011-06-28       Impact factor: 3.240

7.  Diversification of myco-heterotrophic angiosperms: evidence from Burmanniaceae.

Authors:  Vincent Merckx; Lars W Chatrou; Benny Lemaire; Moses N Sainge; Suzy Huysmans; Erik F Smets
Journal:  BMC Evol Biol       Date:  2008-06-23       Impact factor: 3.260

8.  Elevated Extinction Rates as a Trigger for Diversification Rate Shifts: Early Amniotes as a Case Study.

Authors:  Neil Brocklehurst; Marcello Ruta; Johannes Müller; Jörg Fröbisch
Journal:  Sci Rep       Date:  2015-11-23       Impact factor: 4.379
  8 in total

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