Literature DB >> 9174136

Trinucleotide repeat polymorphism within exon 5 of the MICA gene (MHC class I chain-related gene A): allele frequency data in the nine population groups Japanese, Northern Han, Hui, Uygur, Kazakhstan, Iranian, Saudi Arabian, Greek and Italian.

M Ota1, Y Katsuyama, N Mizuki, H Ando, K Furihata, S Ono, P Pivetti-Pezzi, K F Tabbara, G D Palimeris, B Nikbin, F Davatchi, H Chams, Z Geng, S Bahram, H Inoko.   

Abstract

We recently identified a trinucleotide repeat polymorphism, (GCT)n, within the transmembrane (TM) segment of the human MHC class I MICA gene (MHC class I chain-related gene A). Five distinct alleles (A4, A5, A5.1, A6, A9) corresponding to 4, 5, 5 with one nucleotide insertion, 6 and 9 repetitions, respectively, have been detected in various HLA-homozygous B cell lines. Here we present allele frequencies for this trimeric short tandem repeat (STR) in 604 unrelated individuals collected from nine human populations (Japanese, Northern Han, Hui, Uygur, Kazakhstan, Iranian, Saudi Arabian, Greek and Italian) determined using the polymerase chain reaction (PCR) combined with fluorescent-based automated fragment detection technology. All alleles were present in each population, but allelic distributions varied from one population to another. No new alleles (such as A7 or A8) were identified. The evolutionary and structural significance of these data as well as the potential application to forensic medicine is discussed.

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Year:  1997        PMID: 9174136     DOI: 10.1111/j.1399-0039.1997.tb02778.x

Source DB:  PubMed          Journal:  Tissue Antigens        ISSN: 0001-2815


  28 in total

1.  The critical region for Behçet disease in the human major histocompatibility complex is reduced to a 46-kb segment centromeric of HLA-B, by association analysis using refined microsatellite mapping.

Authors:  M Ota; N Mizuki; Y Katsuyama; G Tamiya; T Shiina; A Oka; H Ando; M Kimura; K Goto; S Ohno; H Inoko
Journal:  Am J Hum Genet       Date:  1999-05       Impact factor: 11.025

2.  High-density map of short tandem repeats across the human major histocompatibility complex.

Authors:  Michael Cullen; Michael Malasky; Anita Harding; Mary Carrington
Journal:  Immunogenetics       Date:  2003-02-21       Impact factor: 2.846

3.  Possible polyphyletic origin of major histocompatibility complex class I chain-related gene A (MICA) alleles.

Authors:  Mun-Kit Choy; Maude E Phipps
Journal:  J Mol Evol       Date:  2003-07       Impact factor: 2.395

4.  Analysis of the expression of MICA in small intestinal mucosa of patients with celiac disease.

Authors:  Ainhoa Martín-Pagola; Lourdes Ortiz; Gustavo Pérez de Nanclares; Juan Carlos Vitoria; Luis Castaño; J Ramón Bilbao
Journal:  J Clin Immunol       Date:  2003-11       Impact factor: 8.317

5.  Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.

Authors:  Vinod Kumar; Naoya Kato; Yuji Urabe; Atsushi Takahashi; Ryosuke Muroyama; Naoya Hosono; Motoyuki Otsuka; Ryosuke Tateishi; Masao Omata; Hidewaki Nakagawa; Kazuhiko Koike; Naoyuki Kamatani; Michiaki Kubo; Yusuke Nakamura; Koichi Matsuda
Journal:  Nat Genet       Date:  2011-04-17       Impact factor: 38.330

6.  Role of major histocompatibility complex class I-related molecules A*A5.1 allele in ulcerative colitis in Chinese patients.

Authors:  Min Lü; Bing Xia; Liuqing Ge; Yi Li; Jie Zhao; Fan Chen; Feng Zhou; Xiaolian Zhang; Jinquan Tan
Journal:  Immunology       Date:  2008-11-07       Impact factor: 7.397

7.  MICB0106 gene polymorphism is associated with ulcerative colitis in central China.

Authors:  Yi Li; Bing Xia; Min Lü; Liuqing Ge; Xiaolian Zhang
Journal:  Int J Colorectal Dis       Date:  2009-08-07       Impact factor: 2.571

Review 8.  Genetics of autoimmune diabetes mellitus.

Authors:  Marie Cerná
Journal:  Wien Med Wochenschr       Date:  2008

9.  HLA-Cw*06 class I region rather than MICA is associated with psoriatic arthritis in Czech population.

Authors:  Markéta Fojtíková; Jirí Stolfa; Peter Novota; Pavlína Cejková; Ctibor Dostál; Marie Cerná
Journal:  Rheumatol Int       Date:  2009-01-28       Impact factor: 2.631

10.  Polymorphism in transmembrane region of MICA gene and cholelithiasis.

Authors:  Shou-Chuan Shih; Yann-Jinn Lee; Hsin-Fu Liu; Ching-Wen Dang; Shih-Chuan Chang; Shee-Chan Lin; Chin-Roa Kao
Journal:  World J Gastroenterol       Date:  2003-07       Impact factor: 5.742

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