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Literature DB >> 9171114

Ordered differential display: a simple method for systematic comparison of gene expression profiles.

M Matz¹, N Usman, D Shagin, E Bogdanova, S Lukyanov.

Abstract

A method for display of 3'-end restriction fragments of cDNAs is proposed, extending the idea reported recently. First, representative pools of such fragments are selectively amplified using PCR suppression effect. Then, simplified subsets of these fragments suitable for comparison by PAGE are amplified by adapter-specific primers extended by two randomly picked bases at their 3'ends. By testing all possible combinations of extended primers the whole mRNA pool may be systematically investigated. The method was applied to search for molecular regional markers of freshwater planarian Dugesia tigrina .

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Year: 1997 PMID： 9171114 PMCID： PMC146750 DOI： 10.1093/nar/25.12.2541

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

11 in total

1. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction.

Authors: P Liang; A B Pardee
Journal: Science Date: 1992-08-14 Impact factor: 47.728

2. Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: an approach to in vitro cloning.

Authors: K A Lukyanov; M V Matz; E A Bogdanova; N G Gurskaya; S A Lukyanov
Journal: Nucleic Acids Res Date: 1996-06-01 Impact factor: 16.971

3. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development.

Authors: C W Bachem; R S van der Hoeven; S M de Bruijn; D Vreugdenhil; M Zabeau; R G Visser
Journal: Plant J Date: 1996-05 Impact factor: 6.417

4. Restriction landmark cDNA scanning (RLCS): a novel cDNA display system using two-dimensional gel electrophoresis.

Authors: H Suzuki; T Yaoi; J Kawai; A Hara; G Kuwajima; S Wantanabe
Journal: Nucleic Acids Res Date: 1996-01-15 Impact factor: 16.971

5. RNA fingerprinting by molecular indexing.

Authors: K Kato
Journal: Nucleic Acids Res Date: 1996-01-15 Impact factor: 16.971

6. Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus.

Authors: U B Gyllensten; H A Erlich
Journal: Proc Natl Acad Sci U S A Date: 1988-10 Impact factor: 11.205

7. An improved PCR method for walking in uncloned genomic DNA.

Authors: P D Siebert; A Chenchik; D E Kellogg; K A Lukyanov; S A Lukyanov
Journal: Nucleic Acids Res Date: 1995-03-25 Impact factor: 16.971

8. Analysis of differential gene expression by display of 3' end restriction fragments of cDNAs.

Authors: Y Prashar; S M Weissman
Journal: Proc Natl Acad Sci U S A Date: 1996-01-23 Impact factor: 11.205

9. Genomic organization and expression of the planarian homeobox genes Dth-1 and Dth-2.

Authors: J Garcia-Fernàndez; J Baguñà; E Saló
Journal: Development Date: 1993-05 Impact factor: 6.868

10. Differential regulation of transforming growth factor beta and interleukin 2 genes in human T cells: demonstration by usage of novel competitor DNA constructs in the quantitative polymerase chain reaction.

Authors: B Li; P K Sehajpal; A Khanna; H Vlassara; A Cerami; K H Stenzel; M Suthanthiran
Journal: J Exp Med Date: 1991-11-01 Impact factor: 14.307

13 in total

Review 1. Subtractive hybridization--genetic takeaways and the search for meaning.

Authors: R J Byers; J A Hoyland; J Dixon; A J Freemont
Journal: Int J Exp Pathol Date: 2000-12 Impact factor: 1.925

2. A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward.

Authors: S Lievens; S Goormachtig; M Holsters
Journal: Nucleic Acids Res Date: 2001-09-01 Impact factor: 16.971

3. Gene expression profiling using a novel method: amplified differential gene expression (ADGE).

Authors: Z J Chen; H Shen; K D Tew
Journal: Nucleic Acids Res Date: 2001-05-15 Impact factor: 16.971

4. An approach for global scanning of single nucleotide variations.

Authors: Xinghua Pan; Sherman M Weissman
Journal: Proc Natl Acad Sci U S A Date: 2002-07-01 Impact factor: 11.205

5. Wood formation from the base to the crown in Pinus radiata: gradients of tracheid wall thickness, wood density, radial growth rate and gene expression.

Authors: Sheree Cato; Lisa McMillan; Lloyd Donaldson; Thomas Richardson; Craig Echt; Richard Gardner
Journal: Plant Mol Biol Date: 2006-03 Impact factor: 4.076

Review 6. Differential display of mRNA.

Authors: J S Zhang; E L Duncan; A C Chang; R R Reddel
Journal: Mol Biotechnol Date: 1998-10 Impact factor: 2.695