Literature DB >> 9135160

Multimerization of the adenovirus DNA-binding protein is the driving force for ATP-independent DNA unwinding during strand displacement synthesis.

J Dekker1, P N Kanellopoulos, A K Loonstra, J A van Oosterhout, K Leonard, P A Tucker, P C van der Vliet.   

Abstract

In contrast to other replication systems, adenovirus DNA replication does not require a DNA helicase to unwind the double-stranded template. Elongation is dependent on the adenovirus DNA-binding protein (DBP) which has helix-destabilizing properties. DBP binds cooperatively to single-stranded DNA (ssDNA) in a non-sequence-specific manner. The crystal structure of DBP shows that the protein has a C-terminal extension that hooks on to an adjacent monomer which results in the formation of long protein chains. We show that deletion of this C-terminal arm results in a monomeric protein. The mutant binds with a greatly reduced affinity to ssDNA. The deletion mutant still stimulates initiation of DNA replication like the intact DBP. This shows that a high affinity of DBP for ssDNA is not required for initiation. On a single-stranded template, elongation is also observed in the absence of DBP. Addition of DBP or the deletion mutant has no effect on elongation, although both proteins stimulate initiation on this template. Strand displacement synthesis on a double-stranded template is only observed in the presence of DBP. The mutant, however, does not support elongation on a double-stranded template. The unwinding activity of the mutant is highly reduced compared with intact DBP. These data suggest that protein chain formation by DBP and high affinity binding to the displaced strand drive the ATP-independent unwinding of the template during adenovirus DNA replication.

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Year:  1997        PMID: 9135160      PMCID: PMC1169742          DOI: 10.1093/emboj/16.6.1455

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  38 in total

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Authors:  J Hosoda; B Takacs; C Brack
Journal:  FEBS Lett       Date:  1974-10-15       Impact factor: 4.124

Review 2.  Molecular interactions during adenovirus DNA replication.

Authors:  R T Hay; A Freeman; I Leith; A Monaghan; A Webster
Journal:  Curr Top Microbiol Immunol       Date:  1995       Impact factor: 4.291

Review 3.  Adenovirus DNA replication.

Authors:  P C Van der Vliet
Journal:  Curr Top Microbiol Immunol       Date:  1995       Impact factor: 4.291

4.  Helix-destabilizing activity of phi 29 single-stranded DNA binding protein: effect on the elongation rate during strand displacement DNA replication.

Authors:  M S Soengas; C Gutiérrez; M Salas
Journal:  J Mol Biol       Date:  1995-11-03       Impact factor: 5.469

5.  Stimulation of the adenovirus major late promoter in vitro by transcription factor USF is enhanced by the adenovirus DNA binding protein.

Authors:  D C Zijderveld; F d'Adda di Fagagna; M Giacca; H T Timmers; P C van der Vliet
Journal:  J Virol       Date:  1994-12       Impact factor: 5.103

6.  Crystallization and preliminary X-ray crystallographic studies on the adenovirus ssDNA binding protein in complex with ssDNA.

Authors:  P N Kanellopoulos; H van der Zandt; D Tsernoglou; P C van der Vliet; P A Tucker
Journal:  J Struct Biol       Date:  1995 Jul-Aug       Impact factor: 2.867

7.  Recombinant human replication protein A binds to polynucleotides with low cooperativity.

Authors:  C Kim; M S Wold
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8.  The Oct-1 POU domain stimulates adenovirus DNA replication by a direct interaction between the viral precursor terminal protein-DNA polymerase complex and the POU homeodomain.

Authors:  F E Coenjaerts; J A van Oosterhout; P C van der Vliet
Journal:  EMBO J       Date:  1994-11-15       Impact factor: 11.598

9.  Crystal structure of the adenovirus DNA binding protein reveals a hook-on model for cooperative DNA binding.

Authors:  P A Tucker; D Tsernoglou; A D Tucker; F E Coenjaerts; H Leenders; P C van der Vliet
Journal:  EMBO J       Date:  1994-07-01       Impact factor: 11.598

10.  A precursor terminal protein-trinucleotide intermediate during initiation of adenovirus DNA replication: regeneration of molecular ends in vitro by a jumping back mechanism.

Authors:  A J King; P C van der Vliet
Journal:  EMBO J       Date:  1994-12-01       Impact factor: 11.598

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  19 in total

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Review 3.  Viral and cellular interactions during adenovirus DNA replication.

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Journal:  FEBS Lett       Date:  2019-12-17       Impact factor: 4.124

4.  DNA-directed DNA polymerase and strand displacement activity of the reverse transcriptase encoded by the R2 retrotransposon.

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5.  DNA binding properties of the adenovirus DNA replication priming protein pTP.

Authors:  R N de Jong; L A T Meijer; P C van der Vliet
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

6.  Adenovirus DNA polymerase: domain organisation and interaction with preterminal protein.

Authors:  E J Parker; C H Botting; A Webster; R T Hay
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7.  The Essential, Ubiquitous Single-Stranded DNA-Binding Proteins.

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Journal:  Methods Mol Biol       Date:  2021

8.  Autoantigen La promotes efficient RNAi, antiviral response, and transposon silencing by facilitating multiple-turnover RISC catalysis.

Authors:  Ying Liu; Huiling Tan; Hui Tian; Chunyang Liang; She Chen; Qinghua Liu
Journal:  Mol Cell       Date:  2011-11-04       Impact factor: 17.970

9.  An Adenovirus DNA Replication Factor, but Not Incoming Genome Complexes, Targets PML Nuclear Bodies.

Authors:  Tetsuro Komatsu; Kyosuke Nagata; Harald Wodrich
Journal:  J Virol       Date:  2015-11-25       Impact factor: 5.103

10.  Identification and characterization of the fourth single-stranded-DNA binding domain of replication protein A.

Authors:  S J Brill; S Bastin-Shanower
Journal:  Mol Cell Biol       Date:  1998-12       Impact factor: 4.272

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