Literature DB >> 9135134

Characterization of the iron- and 2-oxoglutarate-binding sites of human prolyl 4-hydroxylase.

J Myllyharju1, K I Kivirikko.   

Abstract

Prolyl 4-hydroxylase (EC 1.14.11.2), an alpha2beta2 tetramer, catalyzes the formation of 4-hydroxyproline in collagens. We converted 16 residues in the human alpha subunit individually to other amino acids, and expressed the mutant polypeptides together with the wild-type beta subunit in insect cells. Asp414Ala and Asp414Asn inactivated the enzyme completely, whereas Asp414Glu increased the K(m) for Fe2+ 15-fold and that for 2-oxoglutarate 5-fold. His412Glu, His483Glu and His483Arg inactivated the tetramer completely, as did Lys493Ala and Lys493His, whereas Lys493Arg increased the K(m) for 2-oxoglutarate 15-fold. His501Arg, His501Lys, His501Asn and His501Gln reduced the enzyme activity by 85-95%; all these mutations increased the K(m) for 2-oxoglutarate 2- to 3-fold and enhanced the rate of uncoupled decarboxylation of 2-oxoglutarate as a percentage of the rate of the complete reaction up to 12-fold. These and other data indicate that His412, Asp414 and His483 provide the three ligands required for the binding of Fe2+ to a catalytic site, while Lys493 provides the residue required for binding of the C-5 carboxyl group of 2-oxoglutarate. His501 is an additional critical residue at the catalytic site, probably being involved in both the binding of the C-1 carboxyl group of 2-oxoglutarate and the decarboxylation of this cosubstrate.

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Year:  1997        PMID: 9135134      PMCID: PMC1169716          DOI: 10.1093/emboj/16.6.1173

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  25 in total

1.  Partial reaction of prolyl hydroxylase. (Gly-PRO-Ala)n stimulates alpha-ketoglutarate decarboxylation without prolyl hydroxylation.

Authors:  N V Rao; E Adams
Journal:  J Biol Chem       Date:  1978-09-25       Impact factor: 5.157

2.  Prolyl hydroxylase half reaction: peptidyl prolyl-independent decarboxylation of alpha-ketoglutarate.

Authors:  D F Counts; G J Cardinale; S Udenfriend
Journal:  Proc Natl Acad Sci U S A       Date:  1978-05       Impact factor: 11.205

3.  Mechanism of the prolyl hydroxylase reaction. 1. Role of co-substrates.

Authors:  L Tuderman; R Myllylä; K I Kivirikko
Journal:  Eur J Biochem       Date:  1977-11-01

4.  Site-directed mutagenesis of residues in a conserved region of bovine aspartyl (asparaginyl) beta-hydroxylase: evidence that histidine 675 has a role in binding Fe2+.

Authors:  K McGinnis; G M Ku; W J VanDusen; J Fu; V Garsky; A M Stern; P A Friedman
Journal:  Biochemistry       Date:  1996-04-02       Impact factor: 3.162

5.  Posttranslational enzymes in the biosynthesis of collagen: intracellular enzymes.

Authors:  K I Kivirikko; R Myllylä
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

6.  A stereochemical concept for the catalytic mechanism of prolylhydroxylase: applicability to classification and design of inhibitors.

Authors:  H M Hanauske-Abel; V Günzler
Journal:  J Theor Biol       Date:  1982-01-21       Impact factor: 2.691

7.  Stoicheiometry and kinetics of the prolyl 4-hydroxylase partial reaction.

Authors:  L De Jong; A Kemp
Journal:  Biochim Biophys Acta       Date:  1984-05-31

8.  The 2-oxoglutarate binding site of prolyl 4-hydroxylase. Identification of distinct subsites and evidence for 2-oxoglutarate decarboxylation in a ligand reaction at the enzyme-bound ferrous ion.

Authors:  K Majamaa; H M Hanauske-Abel; V Günzler; K I Kivirikko
Journal:  Eur J Biochem       Date:  1984-01-16

9.  Ascorbate is consumed stoichiometrically in the uncoupled reactions catalyzed by prolyl 4-hydroxylase and lysyl hydroxylase.

Authors:  R Myllylä; K Majamaa; V Günzler; H M Hanauske-Abel; K I Kivirikko
Journal:  J Biol Chem       Date:  1984-05-10       Impact factor: 5.157

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  42 in total

1.  Chlamydomonas reinhardtii has multiple prolyl 4-hydroxylases, one of which is essential for proper cell wall assembly.

Authors:  Katriina Keskiaho; Reija Hieta; Raija Sormunen; Johanna Myllyharju
Journal:  Plant Cell       Date:  2007-01-12       Impact factor: 11.277

Review 2.  Prolyl 4-hydroxylase activity-responsive transcription factors: from hydroxylation to gene expression and neuroprotection.

Authors:  Ambreena Siddiq; Leila R Aminova; Rajiv R Ratan
Journal:  Front Biosci       Date:  2008-01-01

Review 3.  Hypoxia inducible factor prolyl 4-hydroxylase enzymes: center stage in the battle against hypoxia, metabolic compromise and oxidative stress.

Authors:  Ambreena Siddiq; Leila R Aminova; Rajiv R Ratan
Journal:  Neurochem Res       Date:  2007-03-07       Impact factor: 3.996

Review 4.  The TET enzymes.

Authors:  Peppi Koivunen; Tuomas Laukka
Journal:  Cell Mol Life Sci       Date:  2017-11-28       Impact factor: 9.261

5.  Virus induced gene silencing of three putative prolyl 4-hydroxylases enhances plant growth in tomato (Solanum lycopersicum).

Authors:  Sotirios Fragkostefanakis; Khalid E M Sedeek; Maya Raad; Marwa Samir Zaki; Panagiotis Kalaitzis
Journal:  Plant Mol Biol       Date:  2014-05-07       Impact factor: 4.076

6.  Cloning and characterization of a third human lysyl hydroxylase isoform.

Authors:  K Passoja; K Rautavuoma; L Ala-Kokko; T Kosonen; K I Kivirikko
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

7.  The evolutionarily conserved leprecan gene: its regulation by Brachyury and its role in the developing Ciona notochord.

Authors:  Matthew P Dunn; Anna Di Gregorio
Journal:  Dev Biol       Date:  2009-02-13       Impact factor: 3.582

8.  Crystal structure of prolyl 4-hydroxylase from Bacillus anthracis.

Authors:  Megen A Culpepper; Emily E Scott; Julian Limburg
Journal:  Biochemistry       Date:  2010-01-12       Impact factor: 3.162

9.  Identification of a novel proline-rich peptide-binding domain in prolyl 4-hydroxylase.

Authors:  J Myllyharju; K I Kivirikko
Journal:  EMBO J       Date:  1999-01-15       Impact factor: 11.598

10.  Stringency of the 2-His-1-Asp active-site motif in prolyl 4-hydroxylase.

Authors:  Kelly L Gorres; Khian Hong Pua; Ronald T Raines
Journal:  PLoS One       Date:  2009-11-05       Impact factor: 3.240

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