Literature DB >> 9129837

Protein structural analysis from solid-state NMR-derived orientational constraints.

J R Quine1, M T Brenneman, T A Cross.   

Abstract

High-resolution orientational constraints from solid-state NMR spectroscopy of uniformly aligned biological macromolecules provide a great structural analysis problem. Several approaches to this problem have been made in the past. Here a vector algebra method is developed that provides analytical solutions for the torsion angles and a concise and simple view of the structural possibilities. Numerical instabilities in this approach are easily predicted. Insight into how the structural ambiguities arise in the first place and how they can be reduced in number is demonstrated with this new approach.

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Year:  1997        PMID: 9129837      PMCID: PMC1184429          DOI: 10.1016/S0006-3495(97)78878-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  6 in total

1.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

2.  Macromolecular structural elucidation with solid-state NMR-derived orientational constraints.

Authors:  R R Ketchem; K C Lee; S Huo; T A Cross
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

Review 3.  Protein structure by solid-state NMR spectroscopy.

Authors:  S J Opella; P L Stewart; K G Valentine
Journal:  Q Rev Biophys       Date:  1987-02       Impact factor: 5.318

4.  Experimental determination of torsion angles in the polypeptide backbone of the gramicidin A channel by solid state nuclear magnetic resonance.

Authors:  Q Teng; L K Nicholson; T A Cross
Journal:  J Mol Biol       Date:  1991-04-05       Impact factor: 5.469

5.  A method for studying the structure of uniaxially aligned biopolymers using solid state 15N-nmr: application to Bombyx mori silk fibroin fibers.

Authors:  L K Nicholson; T Asakura; M Demura; T A Cross
Journal:  Biopolymers       Date:  1993-05       Impact factor: 2.505

6.  Molecular orientation and two-component nature of the crystalline fraction of spider dragline silk.

Authors:  A H Simmons; C A Michal; L W Jelinski
Journal:  Science       Date:  1996-01-05       Impact factor: 47.728

  6 in total
  10 in total

1.  Exact solutions for chemical bond orientations from residual dipolar couplings.

Authors:  William J Wedemeyer; Carol A Rohl; Harold A Scherag
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

2.  Structure of the transmembrane region of the M2 protein H(+) channel.

Authors:  J Wang; S Kim; F Kovacs; T A Cross
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  Theoretical study of the structure and dynamic fluctuations of dioxolane-linked gramicidin channels.

Authors:  Ching-Hsing Yu; Samuel Cukierman; Régis Pomès
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

4.  Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure.

Authors:  Lincong Wang; Bruce Randall Donald
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

5.  Continuity conditions and torsion angles from ssNMR orientational restraints.

Authors:  S Achuthan; T Asbury; J Hu; R Bertram; T A Cross; J R Quine
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

6.  Sensitivity enhancement of separated local field experiments: application to membrane proteins.

Authors:  T Gopinath; Raffaello Verardi; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2010-04-22       Impact factor: 2.991

7.  Inter- and intramolecular distance measurements by solid-state MAS NMR: determination of gramicidin A channel dimer structure in hydrated phospholipid bilayers.

Authors:  R Fu; M Cotten; T A Cross
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

8.  Simultaneous structure and dynamics of a membrane protein using REDCRAFT: membrane-bound form of Pf1 coat protein.

Authors:  Paul Shealy; Mikhail Simin; Sang Ho Park; Stanley J Opella; Homayoun Valafar
Journal:  J Magn Reson       Date:  2010-07-30       Impact factor: 2.229

9.  13C solid-state NMR of gramicidin A in a lipid membrane.

Authors:  P O Quist
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

Review 10.  On the role of NMR spectroscopy for characterization of antimicrobial peptides.

Authors:  Fernando Porcelli; Ayyalusamy Ramamoorthy; George Barany; Gianluigi Veglia
Journal:  Methods Mol Biol       Date:  2013
  10 in total

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