Literature DB >> 9098902

Improvement of diffraction quality upon rehydration of dehydrated icosahedral Enterococcus faecalis pyruvate dehydrogenase core crystals.

T Izard1, S Sarfaty, A Westphal, A de Kok, W G Hol.   

Abstract

Members of the family of 2-oxoacid dehydrogenase multienzyme complexes catalyze the oxidative decarboxylation of alpha-keto acids and are among the most remarkable enzymatic machineries in the living cell. These multienzyme complexes combine a highly symmetric (cubic or icosahedral) core with a dynamic and flexible arrangement of numerous subunits and domains surrounding the core. The center of the complex is formed by either 24 or 60 copies of dihydrolipoamide acetyltransferase (E2)-a multidomain enzyme. The hollow icosahedral cores are composed of 60 identical subunits of the catalytic domain of E2 with a molecular weight of about 1.8 million Da. Bipyramidal crystals suitable for X-ray diffraction of the icosahedral core of the pyruvate dehydrogenase multienzyme complex from Enterococcus faecalis were grown up to 0.7 mm in each dimension. The crystals belong to space group R32 with a = b = 244.3 A (hexagonal setting), and have a solvent content of 73%. The asymmetric unit contains one-third of the molecule, i.e., 20 of the 60 subunits. Initial X-ray crystallographic data to 7 A resolution were collected at cryotemperatures at synchrotron facilities. Interestingly, the diffraction was improved significantly upon rehydrating dehydrated crystals and extended to 4.2 A.

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Year:  1997        PMID: 9098902      PMCID: PMC2144755          DOI: 10.1002/pro.5560060419

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  10 in total

1.  Three-dimensional structure of the truncated core of the Saccharomyces cerevisiae pyruvate dehydrogenase complex determined from negative stain and cryoelectron microscopy images.

Authors:  J K Stoops; T S Baker; J P Schroeter; S J Kolodziej; X D Niu; L J Reed
Journal:  J Biol Chem       Date:  1992-12-05       Impact factor: 5.157

Review 2.  Domains, motifs, and linkers in 2-oxo acid dehydrogenase multienzyme complexes: a paradigm in the design of a multifunctional protein.

Authors:  R N Perham
Journal:  Biochemistry       Date:  1991-09-03       Impact factor: 3.162

3.  High resolution structures of HIV-1 RT from four RT-inhibitor complexes.

Authors:  J Ren; R Esnouf; E Garman; D Somers; C Ross; I Kirby; J Keeling; G Darby; Y Jones; D Stuart
Journal:  Nat Struct Biol       Date:  1995-04

Review 4.  Structure-function relationships in dihydrolipoamide acyltransferases.

Authors:  L J Reed; M L Hackert
Journal:  J Biol Chem       Date:  1990-06-05       Impact factor: 5.157

Review 5.  2-Oxo acid dehydrogenase multienzyme complexes: domains, dynamics, and design.

Authors:  R N Perham; L C Packman
Journal:  Ann N Y Acad Sci       Date:  1989       Impact factor: 5.691

6.  The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution.

Authors:  T Kawashima; C Berthet-Colominas; M Wulff; S Cusack; R Leberman
Journal:  Nature       Date:  1996-02-08       Impact factor: 49.962

7.  A kinetic study of dihydrolipoyl transacetylase from bovine kidney.

Authors:  P J Butterworth; C S Tsai; M H Eley; T E Roche; L J Reed
Journal:  J Biol Chem       Date:  1975-03-10       Impact factor: 5.157

8.  Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase.

Authors:  S S Mande; S Sarfaty; M D Allen; R N Perham; W G Hol
Journal:  Structure       Date:  1996-03-15       Impact factor: 5.006

9.  The catalytic domain of the dihydrolipoyl transacetylase component of the pyruvate dehydrogenase complex from Azotobacter vinelandii and Escherichia coli. Expression, purification, properties and preliminary X-ray analysis.

Authors:  E Schulze; A H Westphal; G Obmolova; A Mattevi; W G Hol; A de Kok
Journal:  Eur J Biochem       Date:  1991-11-01

10.  Isolation and characterisation of the pyruvate dehydrogenase complex of anaerobically grown Enterococcus faecalis NCTC 775.

Authors:  J L Snoep; A H Westphal; J A Benen; M J Teixeira de Mattos; O M Neijssel; A de Kok
Journal:  Eur J Biochem       Date:  1992-01-15
  10 in total
  4 in total

1.  Principles of quasi-equivalence and Euclidean geometry govern the assembly of cubic and dodecahedral cores of pyruvate dehydrogenase complexes.

Authors:  T Izard; A Aevarsson; M D Allen; A H Westphal; R N Perham; A de Kok; W G Hol
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

2.  Dramatic improvement of crystal quality for low-temperature-grown rabbit muscle aldolase.

Authors:  Hajeung Park; Erumbi S Rangarajan; Jurgen Sygusch; Tina Izard
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-04-30

3.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2012-03-21       Impact factor: 6.208

4.  Engineering acetyl coenzyme A supply: functional expression of a bacterial pyruvate dehydrogenase complex in the cytosol of Saccharomyces cerevisiae.

Authors:  Barbara U Kozak; Harmen M van Rossum; Marijke A H Luttik; Michiel Akeroyd; Kirsten R Benjamin; Liang Wu; Simon de Vries; Jean-Marc Daran; Jack T Pronk; Antonius J A van Maris
Journal:  mBio       Date:  2014-10-21       Impact factor: 7.867

  4 in total

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