Literature DB >> 9098890

Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria.

E Wallin1, T Tsukihara, S Yoshikawa, G von Heijne, A Elofsson.   

Abstract

We have analyzed the structure of mitochondrial cytochrome c oxidase in terms of general characteristics thought to be important for describing the architecture of helix bundle membrane proteins. Many aspects of the structure are similar to what has previously been found for the photosynthetic reaction center and bacteriorhodopsin. Our results lead to a considerably more precise general picture of membrane protein architecture than has hitherto been possible to obtain.

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Year:  1997        PMID: 9098890      PMCID: PMC2144765          DOI: 10.1002/pro.5560060407

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  32 in total

Review 1.  The distribution of charged amino acids in mitochondrial inner-membrane proteins suggests different modes of membrane integration for nuclearly and mitochondrially encoded proteins.

Authors:  Y Gavel; G von Heijne
Journal:  Eur J Biochem       Date:  1992-05-01

2.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

3.  Information content of binding sites on nucleotide sequences.

Authors:  T D Schneider; G D Stormo; L Gold; A Ehrenfeucht
Journal:  J Mol Biol       Date:  1986-04-05       Impact factor: 5.469

4.  Structure of the reaction center from Rhodobacter sphaeroides R-26: the protein subunits.

Authors:  J P Allen; G Feher; T O Yeates; H Komiya; D C Rees
Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

5.  On the distribution of amino acid residues in transmembrane alpha-helix bundles.

Authors:  F A Samatey; C Xu; J L Popot
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-09       Impact factor: 11.205

6.  Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  S Iwata; C Ostermeier; B Ludwig; H Michel
Journal:  Nature       Date:  1995-08-24       Impact factor: 49.962

7.  Atomic model of plant light-harvesting complex by electron crystallography.

Authors:  W Kühlbrandt; D N Wang; Y Fujiyoshi
Journal:  Nature       Date:  1994-02-17       Impact factor: 49.962

8.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

9.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

10.  The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology.

Authors:  G Heijne
Journal:  EMBO J       Date:  1986-11       Impact factor: 11.598

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  35 in total

1.  Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association.

Authors:  M M Javadpour; M Eilers; M Groesbeek; S O Smith
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  Internal packing of helical membrane proteins.

Authors:  M Eilers; S C Shekar; T Shieh; S O Smith; P J Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Hydrophobicity of transmembrane proteins: spatially profiling the distribution.

Authors:  B David Silverman
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

4.  A knowledge-based potential highlights unique features of membrane α-helical and β-barrel protein insertion and folding.

Authors:  Daniel Hsieh; Alexander Davis; Vikas Nanda
Journal:  Protein Sci       Date:  2011-11-23       Impact factor: 6.725

Review 5.  Structure elucidation of dimeric transmembrane domains of bitopic proteins.

Authors:  Eduard V Bocharov; Pavel E Volynsky; Konstantin V Pavlov; Roman G Efremov; Alexander S Arseniev
Journal:  Cell Adh Migr       Date:  2010-05-01       Impact factor: 3.405

6.  Comparison of class A and D G protein-coupled receptors: common features in structure and activation.

Authors:  Markus Eilers; Viktor Hornak; Steven O Smith; James B Konopka
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

7.  On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins.

Authors:  Lucy R Forrest; Christopher L Tang; Barry Honig
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

Review 8.  Protein folding in membranes.

Authors:  Sebastian Fiedler; Jana Broecker; Sandro Keller
Journal:  Cell Mol Life Sci       Date:  2010-01-27       Impact factor: 9.261

9.  Architecture of beta-barrel membrane proteins: analysis of trimeric porins.

Authors:  K Seshadri; R Garemyr; E Wallin; G von Heijne; A Elofsson
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

10.  Domain analysis of protein P30 in Mycoplasma pneumoniae cytadherence and gliding motility.

Authors:  How-Yi Chang; Jarrat L Jordan; Duncan C Krause
Journal:  J Bacteriol       Date:  2011-01-21       Impact factor: 3.490

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