Literature DB >> 9090134

A three-dimensional NMR experiment with improved sensitivity for carbonyl-carbonyl J correlation in proteins.

S Grzesiek1, A Bax.   

Abstract

Recently, a quantitative J correlation technique has been presented that permits measurement of 3Jc'c' in proteins isotopically enriched with 13C [Hu, J.-S. and Bax, A. (1996) J. Am. Chem. Soc., 118, 8170-8171]. Here, we describe an analogous experiment that is less sensitive to transverse 13C' relaxation, which is the principal limiting factor in all 13C-13C long-range correlation experiments on macromolecules. The new scheme utilizes homonuclear Hartmann-Hahn cross polarization (TOCSY) instead of a COSY type transfer to accomplish magnetization transfer; a description of the relevant relaxation terms is presented. The experiment is demonstrated for ubiquitin and HIV-1 Nef. The results show excellent agreement between 3Jc'c' values measured for ubiquitin with the new scheme and those reported previously. The experiment is particularly useful for distinguishing backbone phi angles that are smaller than -120 degrees from those larger than -120 degrees.

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Year:  1997        PMID: 9090134     DOI: 10.1023/a:1018614505948

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  4 in total

1.  AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR.

Authors:  R A Laskowski; J A Rullmannn; M W MacArthur; R Kaptein; J M Thornton
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

2.  The solution structure of HIV-1 Nef reveals an unexpected fold and permits delineation of the binding surface for the SH3 domain of Hck tyrosine protein kinase.

Authors:  S Grzesiek; A Bax; G M Clore; A M Gronenborn; J S Hu; J Kaufman; I Palmer; S J Stahl; P T Wingfield
Journal:  Nat Struct Biol       Date:  1996-04

3.  The impact of direct refinement against three-bond HN-C alpha H coupling constants on protein structure determination by NMR.

Authors:  D S Garrett; J Kuszewski; T J Hancock; P J Lodi; G W Vuister; A M Gronenborn; G M Clore
Journal:  J Magn Reson B       Date:  1994-05

4.  Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure.

Authors:  A Pardi; M Billeter; K Wüthrich
Journal:  J Mol Biol       Date:  1984-12-15       Impact factor: 5.469

  4 in total
  11 in total

1.  Determination of backbone nitrogen-nitrogen J correlations in proteins.

Authors:  K Theis; A J Dingley; A Hoffmann; J G Omichinski; S Grzesiek
Journal:  J Biomol NMR       Date:  1997-12       Impact factor: 2.835

2.  Backbone and side chain resonance assignmentsof a TRAV14-3 mouse T cell receptor domain.

Authors:  Jin-Shan Hu; Daniel Plaksin; David H Margulies
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

3.  MOAG-4 promotes the aggregation of α-synuclein by competing with self-protective electrostatic interactions.

Authors:  Yuichi Yoshimura; Mats A Holmberg; Predrag Kukic; Camilla B Andersen; Alejandro Mata-Cabana; S Fabio Falsone; Michele Vendruscolo; Ellen A A Nollen; Frans A A Mulder
Journal:  J Biol Chem       Date:  2017-03-23       Impact factor: 5.157

4.  Refined solution structure and backbone dynamics of HIV-1 Nef.

Authors:  S Grzesiek; A Bax; J S Hu; J Kaufman; I Palmer; S J Stahl; N Tjandra; P T Wingfield
Journal:  Protein Sci       Date:  1997-06       Impact factor: 6.725

5.  Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins.

Authors:  Konstantinos Tripsianes; Tobias Madl; Martin Machyna; Dimitrios Fessas; Clemens Englbrecht; Utz Fischer; Karla M Neugebauer; Michael Sattler
Journal:  Nat Struct Mol Biol       Date:  2011-11-20       Impact factor: 15.369

6.  NMR experiments for resonance assignments of 13C, 15N doubly-labeled flexible polypeptides: application to the human prion protein hPrP(23-230).

Authors:  A Liu; R Riek; G Wider; C von Schroetter; R Zahn; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-02       Impact factor: 2.835

7.  Easy and unambiguous sequential assignments of intrinsically disordered proteins by correlating the backbone 15N or 13C' chemical shifts of multiple contiguous residues in highly resolved 3D spectra.

Authors:  Yuichi Yoshimura; Natalia V Kulminskaya; Frans A A Mulder
Journal:  J Biomol NMR       Date:  2015-01-11       Impact factor: 2.835

8.  High accuracy of Karplus equations for relating three-bond J couplings to protein backbone torsion angles.

Authors:  Fang Li; Jung Ho Lee; Alexander Grishaev; Jinfa Ying; Ad Bax
Journal:  Chemphyschem       Date:  2014-12-15       Impact factor: 3.102

9.  The solution structure of a gallium-substituted putidaredoxin mutant: GaPdx C85S.

Authors:  T C Pochapsky; M Kuti; S Kazanis
Journal:  J Biomol NMR       Date:  1998-10       Impact factor: 2.835

10.  Relaxation-optimised Hartmann-Hahn transfer using a specifically Tailored MOCCA-XY16 mixing sequence for carbonyl-carbonyl correlation spectroscopy in 13C direct detection NMR experiments.

Authors:  Isabella C Felli; Roberta Pierattelli; Steffen J Glaser; Burkhard Luy
Journal:  J Biomol NMR       Date:  2009-02-18       Impact factor: 2.835

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