Literature DB >> 9089431

Data modelling with neural networks: advantages and limitations.

D J Livingstone1, D T Manallack, I V Tetko.   

Abstract

The origins and operation of artificial neural networks are briefly described and their early application to data modelling in drug design is reviewed. Four problems in the use of neural networks in data modelling are discussed, namely overfitting, chance effects, overtraining and interpretation, and examples are given of the means by which the first three of these may be avoided. The use of neural networks as a variable selection tool is shown and the advantage of networks as a nonlinear data modelling device is discussed. The display of multivariate data in two dimensions employing a neural network is illustrated using experimental and theoretical data for a set of charge transfer complexes.

Mesh:

Year:  1997        PMID: 9089431     DOI: 10.1023/a:1008074223811

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  11 in total

1.  Novel method for the display of multivariate data using neural networks.

Authors:  D J Livingstone; G Hesketh; D Clayworth
Journal:  J Mol Graph       Date:  1991-06

Review 2.  Pattern recognition methods in rational drug design.

Authors:  D J Livingstone
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

3.  Applications of neural networks in quantitative structure-activity relationships of dihydrofolate reductase inhibitors.

Authors:  T A Andrea; H Kalayeh
Journal:  J Med Chem       Date:  1991-09       Impact factor: 7.446

4.  Neural networks applied to structure-activity relationships.

Authors:  T Aoyama; Y Suzuki; H Ichikawa
Journal:  J Med Chem       Date:  1990-03       Impact factor: 7.446

5.  Neural network studies. 2. Variable selection.

Authors:  I V Tetko; A E Villa; D J Livingstone
Journal:  J Chem Inf Comput Sci       Date:  1996 Jul-Aug

6.  Pattern recognition display methods for the analysis of computed molecular properties.

Authors:  B Hudson; D J Livingstone; E Rahr
Journal:  J Comput Aided Mol Des       Date:  1989-03       Impact factor: 3.686

7.  Chance factors in studies of quantitative structure-activity relationships.

Authors:  J G Topliss; R P Edwards
Journal:  J Med Chem       Date:  1979-10       Impact factor: 7.446

8.  Statistics using neural networks: chance effects.

Authors:  D J Livingstone; D T Manallack
Journal:  J Med Chem       Date:  1993-04-30       Impact factor: 7.446

9.  Analysis of linear and nonlinear QSAR data using neural networks.

Authors:  D T Manallack; D D Ellis; D J Livingstone
Journal:  J Med Chem       Date:  1994-10-28       Impact factor: 7.446

10.  HIV-1 reverse transcriptase inhibitor design using artificial neural networks.

Authors:  I V Tetko; N P Chentsova; S V Antonenko; G I Poda; V P Kukhar; A I Luik
Journal:  J Med Chem       Date:  1994-08-05       Impact factor: 7.446

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  7 in total

Review 1.  Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM).

Authors:  Michael Fernandez; Julio Caballero; Leyden Fernandez; Akinori Sarai
Journal:  Mol Divers       Date:  2010-03-20       Impact factor: 2.943

2.  Drug design for ever, from hype to hope.

Authors:  G Seddon; V Lounnas; R McGuire; T van den Bergh; R P Bywater; L Oliveira; G Vriend
Journal:  J Comput Aided Mol Des       Date:  2012-01-18       Impact factor: 3.686

3.  Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information.

Authors:  Iurii Sushko; Sergii Novotarskyi; Robert Körner; Anil Kumar Pandey; Matthias Rupp; Wolfram Teetz; Stefan Brandmaier; Ahmed Abdelaziz; Volodymyr V Prokopenko; Vsevolod Y Tanchuk; Roberto Todeschini; Alexandre Varnek; Gilles Marcou; Peter Ertl; Vladimir Potemkin; Maria Grishina; Johann Gasteiger; Christof Schwab; Igor I Baskin; Vladimir A Palyulin; Eugene V Radchenko; William J Welsh; Vladyslav Kholodovych; Dmitriy Chekmarev; Artem Cherkasov; Joao Aires-de-Sousa; Qing-You Zhang; Andreas Bender; Florian Nigsch; Luc Patiny; Antony Williams; Valery Tkachenko; Igor V Tetko
Journal:  J Comput Aided Mol Des       Date:  2011-06-10       Impact factor: 3.686

4.  A new approach to radial basis function approximation and its application to QSAR.

Authors:  Alexey V Zakharov; Megan L Peach; Markus Sitzmann; Marc C Nicklaus
Journal:  J Chem Inf Model       Date:  2014-02-28       Impact factor: 4.956

5.  Performance improvement of machine learning techniques predicting the association of exacerbation of peak expiratory flow ratio with short term exposure level to indoor air quality using adult asthmatics clustered data.

Authors:  Wan D Bae; Sungroul Kim; Choon-Sik Park; Shayma Alkobaisi; Jongwon Lee; Wonseok Seo; Jong Sook Park; Sujung Park; Sangwoon Lee; Jong Wook Lee
Journal:  PLoS One       Date:  2021-01-07       Impact factor: 3.240

6.  Towards Data-Driven Vehicle Estimation for Signalised Intersections in a Partially Connected Environment.

Authors:  Roozbeh Mohammadi; Claudio Roncoli
Journal:  Sensors (Basel)       Date:  2021-12-19       Impact factor: 3.576

7.  Machine Learning Data Imputation and Classification in a Multicohort Hypertension Clinical Study.

Authors:  William Seffens; Chad Evans; Herman Taylor
Journal:  Bioinform Biol Insights       Date:  2016-05-09
  7 in total

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