Literature DB >> 9088711

Regional assignment of genetic markers using a somatic cell hybrid panel: a WWW interactive program available for the pig genome.

C Chevalet1, J Gouzy, M SanCristobal-Gaudy.   

Abstract

MOTIVATION: Quick and easy gene mapping by the use of a panel of cytogenetically characterized somatic cell hybrids is possible, even if some discordant experimental results arise.
RESULTS: An interactive program is proposed and is made available on a WWW site to users of a somatic cell hybrid panel. Assignments to chromosomes and subchromosomal regions are based on likelihood calculations and Bayes' theorem, and a confidence level is provided. The method is illustrated in the case of the pig genome.

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Year:  1997        PMID: 9088711     DOI: 10.1093/bioinformatics/13.1.69

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  13 in total

1.  Mapping dispersed repetitive loci using semi-specific PCR cloning and somatic cell hybrid mapping.

Authors:  Y M Deng; J H Lee; C Moran; J H Jin; B E Tuch; W D Rawlinson
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

2.  Comparative mapping in the pig: localization of 214 expressed sequence tags.

Authors:  Susanna Cirera; Claus B Jørgensen; Milena Sawera; Terje Raudsepp; Bhanu P Chowdhary; Merete Fredholm
Journal:  Mamm Genome       Date:  2003-06       Impact factor: 2.957

3.  Molecular characterization of the porcine STAT4 and STAT6 genes.

Authors:  Jing Huang; Guojian Ma; Mengjin Zhu; Jianzhi Pan; Wenchang Zhang; Shu-Hong Zhao
Journal:  Mol Biol Rep       Date:  2012-02-07       Impact factor: 2.316

4.  Cloning, chromosomal localization, expression profile and association analysis of the porcine WNT10B gene with backfat thickness.

Authors:  Xiaoping He; Hui Gao; Chuxin Liu; Bin Fan; Bang Liu
Journal:  Mol Biol Rep       Date:  2010-02-04       Impact factor: 2.316

5.  Expansion of the pig comparative map by expressed sequence tags (EST) mapping.

Authors:  A K Fridolfsson; T Hori; A K Winterø; M Fredholm; M Yerle; A Robic; L Andersson; H Ellegren
Journal:  Mamm Genome       Date:  1997-12       Impact factor: 2.957

6.  Localization of the beta 2-microglobulin gene to pig chromosome 1q17.

Authors:  C Rogel-Gaillard; M Vaiman; C Renard; P Chardon; M Yerle
Journal:  Mamm Genome       Date:  1997-12       Impact factor: 2.957

7.  Improvement of the porcine transcription map: localization of 33 genes, of which 24 are orthologous.

Authors:  A K Wintero; C B Jorgensen; A Robic; M Yerle; M Fredholm
Journal:  Mamm Genome       Date:  1998-05       Impact factor: 2.957

8.  Mapping of 22 expressed sequence tags isolated from a porcine small intestine cDNA library.

Authors:  C B Jorgensen; A K Wintero; M Yerle; M Fredholm
Journal:  Mamm Genome       Date:  1997-06       Impact factor: 2.957

9.  Molecular characterization, expression analysis and association study with immune traits of porcine PSMB6 gene.

Authors:  Xiao Wu; Yanfang Wang; Yunzi Sun
Journal:  Mol Biol Rep       Date:  2011-05-22       Impact factor: 2.316

10.  Xenoduplex analysis--a method for comparative gene mapping using hybrid panels.

Authors:  L Marklund; J T Jeon; L Andersson
Journal:  Genome Res       Date:  1998-04       Impact factor: 9.043

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