Literature DB >> 9086265

Solution structure of the albumin-binding GA module: a versatile bacterial protein domain.

M U Johansson1, M de Château, M Wikström, S Forsén, T Drakenberg, L Björck.   

Abstract

The albumin-binding GA module is found in a family of surface proteins of different bacterial species. It comprises 45 amino acid residues and represents the first known example of contemporary module shuffling. Using 1H NMR spectroscopy we have determined the solution structure of the GA module from protein PAB, a protein of the anaerobic human commensal and pathogen Peptostreptococcus magnus. This structure, the first three-dimensional structure of an albumin-binding protein domain described, was shown to be composed of a left-handed three-helix-bundle. Sequence differences between GA modules with different affinities for albumin indicated that a conserved region in the C-terminal part of the second helix and the flexible sequence between helices 2 and 3 could contribute to the albumin-binding activity. The effect on backbone amide proton exchange rates upon binding to albumin support this assumption. The GA module has a fold that is strikingly similar to the immunoglobulin-binding domains of staphylococcal protein A but it shows no resemblance to the fold shared by the immunoglobulin-binding domains of streptococcal protein G and peptostreptococcal protein L. When the gene sequences, binding properties and thermal stability of these four domains are analysed in relation to their global folds an evolutionary pattern emerges. Thus, in the evolution of novel binding properties mutations are allowed only as long as the energetically favourable global fold is maintained.

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Year:  1997        PMID: 9086265     DOI: 10.1006/jmbi.1996.0856

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  27 in total

1.  Mutational analysis of the interaction between albumin-binding domain from streptococcal protein G and human serum albumin.

Authors:  Martin Linhult; Hans Kaspar Binz; Mathias Uhlén; Sophia Hober
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

2.  Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains.

Authors:  Adam Liwo; Mey Khalili; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

3.  Reaction coordinates and rates from transition paths.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

4.  On the characterization of protein native state ensembles.

Authors:  Amarda Shehu; Lydia E Kavraki; Cecilia Clementi
Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

5.  Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and tests of the optimization method with single training proteins.

Authors:  Adam Liwo; Mey Khalili; Cezary Czaplewski; Sebastian Kalinowski; Staniłsaw Ołdziej; Katarzyna Wachucik; Harold A Scheraga
Journal:  J Phys Chem B       Date:  2007-01-11       Impact factor: 2.991

6.  Effect of interactions with the chaperonin cavity on protein folding and misfolding.

Authors:  Anshul Sirur; Michael Knott; Robert B Best
Journal:  Phys Chem Chem Phys       Date:  2013-09-27       Impact factor: 3.676

7.  Funneling and frustration in the energy landscapes of some designed and simplified proteins.

Authors:  Ha H Truong; Bobby L Kim; Nicholas P Schafer; Peter G Wolynes
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

8.  Coordinate-dependent diffusion in protein folding.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

9.  Implementation of a Serial Replica Exchange Method in a Physics-Based United-Residue (UNRES) Force Field.

Authors:  Hujun Shen; Cezary Czaplewski; Adam Liwo; Harold A Scheraga
Journal:  J Chem Theory Comput       Date:  2008-08-01       Impact factor: 6.006

10.  Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.

Authors:  Takatsugu Goto; Atsushi Yamashita; Hideki Hirakawa; Minenosuke Matsutani; Kozo Todo; Kenshiro Ohshima; Hidehiro Toh; Kazuaki Miyamoto; Satoru Kuhara; Masahira Hattori; Tohru Shimizu; Shigeru Akimoto
Journal:  DNA Res       Date:  2008-02-07       Impact factor: 4.458

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