Literature DB >> 9079366

Protein folding from a combinatorial perspective.

R T Sauer1.   

Abstract

Combinatorial mutagenesis experiments show the existence of many different solutions to the problem of complementary packing of non-polar sidechains in the protein core. They suggest that a significant amount of structural information is carried by the simple pattern of polar and non-polar residues along the polypeptide chain, indicate that the formation of buried polar interactions may be a fundamentally slow step in protein folding and show that proteins with many native properties occur at reasonable frequencies in random sequence libraries.

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Year:  1996        PMID: 9079366     DOI: 10.1016/S1359-0278(96)00015-6

Source DB:  PubMed          Journal:  Fold Des        ISSN: 1359-0278


  8 in total

Review 1.  De novo design of helical bundles as models for understanding protein folding and function.

Authors:  R B Hill; D P Raleigh; A Lombardi; W F DeGrado
Journal:  Acc Chem Res       Date:  2000-11       Impact factor: 22.384

2.  Native protein sequences are close to optimal for their structures.

Authors:  B Kuhlman; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

3.  On the evolution of primitive genetic codes.

Authors:  Günter Weberndorfer; Ivo L Hofacker; Peter F Stadler
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

4.  Buried hydrophobic side-chains essential for the folding of the parallel beta-helix domains of the P22 tailspike.

Authors:  Scott Betts; Cameron Haase-Pettingell; Kristen Cook; Jonathan King
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

5.  An elongated spine of buried core residues necessary for in vivo folding of the parallel beta-helix of P22 tailspike adhesin.

Authors:  Ryan Simkovsky; Jonathan King
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

6.  Structure comparison of human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein P14a indicates a functional link between the human immune system and a plant defense system.

Authors:  T Szyperski; C Fernández; C Mumenthaler; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

7.  The mechanism of folding of Im7 reveals competition between functional and kinetic evolutionary constraints.

Authors:  Claire T Friel; D Alastair Smith; Michele Vendruscolo; Joerg Gsponer; Sheena E Radford
Journal:  Nat Struct Mol Biol       Date:  2009-03-01       Impact factor: 15.369

8.  Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization.

Authors:  Matthew D Smith; Matthew A Rosenow; Meitian Wang; James P Allen; Jack W Szostak; John C Chaput
Journal:  PLoS One       Date:  2007-05-23       Impact factor: 3.240

  8 in total

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