Literature DB >> 9048892

Interrupted catalytic domain structures in xylanases from two distantly related strains of Prevotella ruminicola.

H J Flint1, T R Whitehead, J C Martin, A Gasparic.   

Abstract

Two xylanases from the rumen anaerobic bacterium Prevotella ruminicola were found to possess highly unusual structures in which family 10 catalytic domains are interrupted by unrelated sequences. XynC from P. ruminicola B(1)4 carries a 160 amino-acid insertion, while a P. ruminicola D31d xylanase carries an unrelated region of 280 amino acids, containing an imperfect 130 amino-acid duplication. Both regions of family 10 similarity were shown to be essential for activity of the D31d enzyme.

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Year:  1997        PMID: 9048892     DOI: 10.1016/s0167-4838(96)00213-0

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  14 in total

1.  Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi.

Authors:  Siddhika Pareek; Takashi Kurakawa; Bhabatosh Das; Daisuke Motooka; Shuuichi Nakaya; Temsunaro Rongsen-Chandola; Nidhi Goyal; Hisako Kayama; Dylan Dodd; Ryu Okumura; Yuichi Maeda; Kosuke Fujimoto; Takuro Nii; Takao Ogawa; Tetsuya Iida; Nita Bhandari; Toshiyuki Kida; Shota Nakamura; G Balakrish Nair; Kiyoshi Takeda
Journal:  NPJ Biofilms Microbiomes       Date:  2019-12-20       Impact factor: 7.290

2.  Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes.

Authors:  Dylan Dodd; Young-Hwan Moon; Kankshita Swaminathan; Roderick I Mackie; Isaac K O Cann
Journal:  J Biol Chem       Date:  2010-07-09       Impact factor: 5.157

3.  Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes.

Authors:  Meiling Zhang; Jonathan R Chekan; Dylan Dodd; Pei-Ying Hong; Lauren Radlinski; Vanessa Revindran; Satish K Nair; Roderick I Mackie; Isaac Cann
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

Review 4.  Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes.

Authors:  Dylan Dodd; Roderick I Mackie; Isaac K O Cann
Journal:  Mol Microbiol       Date:  2010-12-07       Impact factor: 3.501

5.  Involvement of the multidomain regulatory protein XynR in positive control of xylanase gene expression in the ruminal anaerobe Prevotella bryantii B(1)4.

Authors:  Kohji Miyazaki; Hiroyuki Miyamoto; Derry K Mercer; Tatsuaki Hirase; Jennifer C Martin; Yoichi Kojima; Harry J Flint
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

Review 6.  The Sus operon: a model system for starch uptake by the human gut Bacteroidetes.

Authors:  Matthew H Foley; Darrell W Cockburn; Nicole M Koropatkin
Journal:  Cell Mol Life Sci       Date:  2016-05-02       Impact factor: 9.261

7.  Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23.

Authors:  Dylan Dodd; Svetlana A Kocherginskaya; M Ashley Spies; Kyle E Beery; Charles A Abbas; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2009-03-20       Impact factor: 3.490

8.  High genetic diversity and different distributions of glycosyl hydrolase family 10 and 11 xylanases in the goat rumen.

Authors:  Guozeng Wang; Huiying Luo; Kun Meng; Yaru Wang; Huoqing Huang; Pengjun Shi; Xia Pan; Peilong Yang; Qiyu Diao; Hongfu Zhang; Bin Yao
Journal:  PLoS One       Date:  2011-02-03       Impact factor: 3.240

Review 9.  Microbial degradation of complex carbohydrates in the gut.

Authors:  Harry J Flint; Karen P Scott; Sylvia H Duncan; Petra Louis; Evelyne Forano
Journal:  Gut Microbes       Date:  2012-05-10

10.  Phylogenetic diversity and environment-specific distributions of glycosyl hydrolase family 10 xylanases in geographically distant soils.

Authors:  Guozeng Wang; Kun Meng; Huiying Luo; Yaru Wang; Huoqing Huang; Pengjun Shi; Peilong Yang; Zhifang Zhang; Bin Yao
Journal:  PLoS One       Date:  2012-08-17       Impact factor: 3.240

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