Literature DB >> 21219452

Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes.

Dylan Dodd1, Roderick I Mackie, Isaac K O Cann.   

Abstract

Microbial inhabitants of the bovine rumen fulfil the majority of the normal caloric requirements of the animal by fermenting lignocellulosic plant polysaccharides and releasing short chain fatty acids that are then metabolized by the host. This process also occurs within the human colon, although the fermentation products contribute less to the overall energy requirements of the host. Mounting evidence, however, indicates that the community structure of the distal gut microbiota is a critical factor that influences the inflammatory potential of the immune system thereby impacting the progression of inflammatory bowel diseases. Non-digestible dietary fibre derived from plant material is highly enriched in the lignocellulosic polysaccharides, cellulose and xylan. Members of the Bacteroidetes constitute a dominant phylum in both the human colonic microbiome and the rumen microbial ecosystem. In the current article, we review recent insights into the molecular mechanisms for xylan degradation by rumen and human commensal members of the Bacteroidetes phylum, and place this information in the context of the physiological and metabolic processes that occur within these complex microbial environments.
© 2010 Blackwell Publishing Ltd.

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Year:  2010        PMID: 21219452      PMCID: PMC4561535          DOI: 10.1111/j.1365-2958.2010.07473.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  56 in total

1.  Physiological characterization of SusG, an outer membrane protein essential for starch utilization by Bacteroides thetaiotaomicron.

Authors:  J A Shipman; K H Cho; H A Siegel; A A Salyers
Journal:  J Bacteriol       Date:  1999-12       Impact factor: 3.490

2.  Enzymes associated with metabolism of xylose and other pentoses by Prevotella (Bacteroides) ruminicola strains, Selenomonas ruminantium D, and Fibrobacter succinogenes S85.

Authors:  A Matte; C W Forsberg; A M Verrinder Gibbins
Journal:  Can J Microbiol       Date:  1992-05       Impact factor: 2.419

3.  Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola.

Authors:  G Avgustin; R J Wallace; H J Flint
Journal:  Int J Syst Bacteriol       Date:  1997-04

4.  Nucleotide sequences of xylan-inducible xylanase and xylosidase/arabinosidase genes from Bacteroides ovatus V975.

Authors:  T R Whitehead
Journal:  Biochim Biophys Acta       Date:  1995-05-11

5.  The solution structure of the CBM4-2 carbohydrate binding module from a thermostable Rhodothermus marinus xylanase.

Authors:  Peter J Simpson; Stuart J Jamieson; Maher Abou-Hachem; Eva Nordberg Karlsson; Harry J Gilbert; Olle Holst; Michael P Williamson
Journal:  Biochemistry       Date:  2002-05-07       Impact factor: 3.162

6.  Medium- to large-sized xylo-oligosaccharides are responsible for xylanase induction in Prevotella bryantii B14.

Authors:  Kohji Miyazaki; Tatsuaki Hirase; Yoichi Kojima; Harry James Flint
Journal:  Microbiology       Date:  2005-12       Impact factor: 2.777

7.  Bacteroides intestinalis sp. nov., isolated from human faeces.

Authors:  Mohammad Abdul Bakir; Maki Kitahara; Mitsuo Sakamoto; Mitsuharu Matsumoto; Yoshimi Benno
Journal:  Int J Syst Evol Microbiol       Date:  2006-01       Impact factor: 2.747

8.  Effect of regulatory protein levels on utilization of starch by Bacteroides thetaiotaomicron.

Authors:  J N D'Elia; A A Salyers
Journal:  J Bacteriol       Date:  1996-12       Impact factor: 3.490

9.  Genetic analysis of a locus on the Bacteroides ovatus chromosome which contains xylan utilization genes.

Authors:  J Weaver; T R Whitehead; M A Cotta; P C Valentine; A A Salyers
Journal:  Appl Environ Microbiol       Date:  1992-09       Impact factor: 4.792

10.  A xylan hydrolase gene cluster in Prevotella ruminicola B(1)4: sequence relationships, synergistic interactions, and oxygen sensitivity of a novel enzyme with exoxylanase and beta-(1,4)-xylosidase activities.

Authors:  A Gasparic; J Martin; A S Daniel; H J Flint
Journal:  Appl Environ Microbiol       Date:  1995-08       Impact factor: 4.792

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  67 in total

1.  Fiber-associated spirochetes are major agents of hemicellulose degradation in the hindgut of wood-feeding higher termites.

Authors:  Gaku Tokuda; Aram Mikaelyan; Chiho Fukui; Yu Matsuura; Hirofumi Watanabe; Masahiro Fujishima; Andreas Brune
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-30       Impact factor: 11.205

2.  Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi.

Authors:  Siddhika Pareek; Takashi Kurakawa; Bhabatosh Das; Daisuke Motooka; Shuuichi Nakaya; Temsunaro Rongsen-Chandola; Nidhi Goyal; Hisako Kayama; Dylan Dodd; Ryu Okumura; Yuichi Maeda; Kosuke Fujimoto; Takuro Nii; Takao Ogawa; Tetsuya Iida; Nita Bhandari; Toshiyuki Kida; Shota Nakamura; G Balakrish Nair; Kiyoshi Takeda
Journal:  NPJ Biofilms Microbiomes       Date:  2019-12-20       Impact factor: 7.290

3.  Phylogenetic and functional analysis of gut microbiota of a fungus-growing higher termite: Bacteroidetes from higher termites are a rich source of β-glucosidase genes.

Authors:  Meiling Zhang; Ning Liu; Changli Qian; Qianfu Wang; Qian Wang; Yanhua Long; Yongping Huang; Zhihua Zhou; Xing Yan
Journal:  Microb Ecol       Date:  2014-03-02       Impact factor: 4.552

4.  Enhanced production of xylanase by Fusarium sp. BVKT R2 and evaluation of its biomass saccharification efficiency.

Authors:  G Ramanjaneyulu; A Sridevi; P Seshapani; A Ramya; K Dileep Kumar; G Praveen Kumar Reddy; B Rajasekhar Reddy
Journal:  3 Biotech       Date:  2017-09-26       Impact factor: 2.406

5.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

Authors:  Marina García-López; Jan P Meier-Kolthoff; Brian J Tindall; Sabine Gronow; Tanja Woyke; Nikos C Kyrpides; Richard L Hahnke; Markus Göker
Journal:  Front Microbiol       Date:  2019-09-23       Impact factor: 5.640

6.  Two SusD-like proteins encoded within a polysaccharide utilization locus of an uncultured ruminant Bacteroidetes phylotype bind strongly to cellulose.

Authors:  A K Mackenzie; P B Pope; H L Pedersen; R Gupta; M Morrison; W G T Willats; V G H Eijsink
Journal:  Appl Environ Microbiol       Date:  2012-06-08       Impact factor: 4.792

7.  The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra).

Authors:  Katherine R Amato; Steven R Leigh; Angela Kent; Roderick I Mackie; Carl J Yeoman; Rebecca M Stumpf; Brenda A Wilson; Karen E Nelson; Bryan A White; Paul A Garber
Journal:  Microb Ecol       Date:  2014-12-19       Impact factor: 4.552

8.  Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes.

Authors:  Meiling Zhang; Jonathan R Chekan; Dylan Dodd; Pei-Ying Hong; Lauren Radlinski; Vanessa Revindran; Satish K Nair; Roderick I Mackie; Isaac Cann
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

9.  Two new xylanases with different substrate specificities from the human gut bacterium Bacteroides intestinalis DSM 17393.

Authors:  Pei-Ying Hong; Michael Iakiviak; Dylan Dodd; Meiling Zhang; Roderick I Mackie; Isaac Cann
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

10.  Description of a novel pectin-degrading bacterial species Prevotella pectinovora sp. nov., based on its phenotypic and genomic traits.

Authors:  Brigita Nograšek; Tomaž Accetto; Lijana Fanedl; Gorazd Avguštin
Journal:  J Microbiol       Date:  2015-07-31       Impact factor: 3.422

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