Literature DB >> 9032063

The role of water in protein-DNA interactions.

J W Schwabe1.   

Abstract

It is becoming well accepted that water plays an important role in both the specificity and affinity of protein-DNA interactions. Recently, a combination of structural, biochemical and thermodynamic techniques has particularly enhanced our understanding of the role of water in complexes between DNA and three different proteins: the trp repressor; the homeodomain; and the glucocorticoid receptor DNA-binding domain.

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Year:  1997        PMID: 9032063     DOI: 10.1016/s0959-440x(97)80016-4

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  39 in total

1.  Role of hydration water in protein unfolding.

Authors:  G W Robinson; C H Cho
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Change in conformation by DNA-peptide association: molecular dynamics of the Hin-recombinase-hixL complex.

Authors:  Y Komeiji; M Uebayasi
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

3.  Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution.

Authors:  Y Tang; L Nilsson
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

4.  Mutants of ETS domain PU.1 and GGAA/T recognition: free energies and kinetics.

Authors:  F Pio; N Assa-Munt; J Yguerabide; R A Maki
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

5.  Molecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solution.

Authors:  J X Guo ; W H Gmeiner
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

6.  Use of electrospray ionization mass spectrometry to study binding interactions between a replication terminator protein and DNA.

Authors:  Amit Kapur; Jennifer L Beck; Susan E Brown; Nicholas E Dixon; Margaret M Sheil
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

7.  Dissecting the molecular origins of specific protein-nucleic acid recognition: hydrostatic pressure and molecular dynamics.

Authors:  Thomas W Lynch; Dorina Kosztin; Mark A McLean; Klaus Schulten; Stephen G Sligar
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

8.  Testing water-mediated DNA recognition by the Hin recombinase.

Authors:  Thang Kien Chiu; Catherine Sohn; Richard E Dickerson; Reid C Johnson
Journal:  EMBO J       Date:  2002-02-15       Impact factor: 11.598

9.  Structure and hydration of the DNA-human topoisomerase I covalent complex.

Authors:  G Chillemi; T Castrignanò; A Desideri
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

10.  The effect of tightly bound water molecules on the structural interpretation of ligand-derived pharmacophore models.

Authors:  David G Lloyd; Alfonso T García-Sosa; Ian L Alberts; Nikolay P Todorov; Ricardo L Manceral
Journal:  J Comput Aided Mol Des       Date:  2004-02       Impact factor: 3.686

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