Literature DB >> 9027317

Structural convergence in the active sites of a family of catalytic antibodies.

J B Charbonnier1, B Golinelli-Pimpaneau, B Gigant, D S Tawfik, R Chap, D G Schindler, S H Kim, B S Green, Z Eshhar, M Knossow.   

Abstract

The x-ray structures of three esterase-like catalytic antibodies identified by screening for catalytic activity the entire hybridoma repertoire, elicited in response to a phosphonate transition state analog (TSA) hapten, were analyzed. The high resolution structures account for catalysis by transition state stabilization, and in all three antibodies a tyrosine residue participates in the oxyanion hole. Despite significant conformational differences in their combining sites, the three antibodies, which are the most efficient among those elicited, achieve catalysis in essentially the same mode, suggesting that evolution for binding to a single TSA followed by screening for catalysis lead to antibodies with structural convergence.

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9027317     DOI: 10.1126/science.275.5303.1140

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  10 in total

1.  Enzyme mimicry by the antiidiotypic antibody approach.

Authors:  A V Kolesnikov; A V Kozyr; E S Alexandrova; F Koralewski; A V Demin; M I Titov; B Avalle; A Tramontano; S Paul; D Thomas; A G Gabibov; A Friboulet
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  Catalysis of esterolytic reactions by the anti-idiotypic antibody against human erythrocyte acetylcholinesterase.

Authors:  E S Alexandrova; F Koralewski; M I Titov; A V Demin; A N Ignatova; A V Kozyr; A V Kolesnikov; A Tramontano; S Paul; D Thomas; A G Gabibov; A Friboulet
Journal:  Dokl Biochem Biophys       Date:  2001 Mar-Apr       Impact factor: 0.788

3.  Binding specificity of hydrolytic catalytic antibody: lessons from the diverse immune system.

Authors:  Y Wada; M Ono
Journal:  J Protein Chem       Date:  1999-02

4.  Identification of protein functions from a molecular surface database, eF-site.

Authors:  Kengo Kinoshita; Jun'ichi Furui; Haruki Nakamura
Journal:  J Struct Funct Genomics       Date:  2002

5.  Evidence for 'lock and key' character in an anti-phosphonate hydrolytic antibody catalytic site augmented by non-reaction centre recognition: variation in substrate selectivity between an anti-phosphonate antibody, an anti-phosphate antibody and two hydrolytic enzymes.

Authors:  Sanjiv Sonkaria; Guillaume Boucher; José Flórez-Olvarez; Bilal Said; Syeed Hussain; Elizabeth L Ostler; Sheraz Gul; Emrys W Thomas; Marina Resmini; Gerard Gallacher; Keith Brocklehurst
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

6.  X-ray structures of a hydrolytic antibody and of complexes elucidate catalytic pathway from substrate binding and transition state stabilization through water attack and product release.

Authors:  B Gigant; J B Charbonnier; Z Eshhar; B S Green; M Knossow
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

7.  Identification and characterization of single chain anti-cocaine catalytic antibodies.

Authors:  Kathleen M McKenzie; Jenny M Mee; Claude J Rogers; Mark S Hixon; Gunnar F Kaufmann; Kim D Janda
Journal:  J Mol Biol       Date:  2006-11-03       Impact factor: 5.469

Review 8.  Mining electron density for functionally relevant protein polysterism in crystal structures.

Authors:  James S Fraser; Colin J Jackson
Journal:  Cell Mol Life Sci       Date:  2010-12-29       Impact factor: 9.261

9.  Molecular Mechanism and Energy Basis of Conformational Diversity of Antibody SPE7 Revealed by Molecular Dynamics Simulation and Principal Component Analysis.

Authors:  Jianzhong Chen; Jinan Wang; Weiliang Zhu
Journal:  Sci Rep       Date:  2016-11-10       Impact factor: 4.379

10.  Structure basis for AA98 inhibition on the activation of endothelial cells mediated by CD146.

Authors:  Xuehui Chen; Huiwen Yan; Dan Liu; Qingji Xu; Hongxia Duan; Jing Feng; Xiyun Yan; Can Xie
Journal:  iScience       Date:  2021-04-14
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.