Literature DB >> 9022704

Anaerobic crystallisation of an isopenicillin N synthase.Fe(II).substrate complex demonstrated by X-ray studies.

P L Roach1, I J Clifton, C M Hensgens, N Shibata, A J Long, R W Strange, S S Hasnain, C J Schofield, J E Baldwin, J Hajdu.   

Abstract

Isopenicillin N synthase (IPNS) was cocrystallised with ferrous sulphate and its substrate, delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-valine (Aad-Cys-Val). Vital to the successful procedure was the maintenance of a rigorously anaerobic environment. Hanging-drop vapour-diffusion crystallisation experiments, using lithium sulphate as the precipitant produced three crystal forms. Form I crystals, with a plate habit, diffracted X-rays to at least 0.11-nm resolution at the European Synchrotron Radiation Facility and belong to the space group P2(1)2(1)2(1), with unit-cell dimensions a = 4.68, b = 7.15, c = 10.10 nm. Their asymmetric unit contains a single IPNS.Fe(II).Aad-Cys-Val complex with a solvent content of 38.5%. Form II crystals, with a hexagonal habit, diffract X-rays to at least 0.21 nm resolution at the European Synchrotron Radiation Facility and belong to the space group P3(1)21, with unit-cell dimensions a = 10.10, b = 10.10, c = 11.567 nm. Their asymmetric unit also contains a single IPNS.Fe(II).Aad-Cys-Val complex with a solvent content of 69.5%. Form III crystals, needles, do not show well-ordered diffraction. Although all three forms were initially produced in crystallisation experiments under identical conditions, appropriate micro and streak seeding allows selective crystallisation of form I or form II crystals. Extended X-ray-absorption fine-structure studies on a crystalline slurry of the form I crystals demonstrate the presence of an Fe-S(Aad-Cys-Val) bond length of 0.234 +/- 0.003 nm.

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Year:  1996        PMID: 9022704     DOI: 10.1111/j.1432-1033.1996.0736r.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  12 in total

1.  Structural studies on the reaction of isopenicillin N synthase with the substrate analogue delta-(l-alpha-aminoadipoyl)-l-cysteinyl-d-alpha-aminobutyrate.

Authors:  Alexandra J Long; Ian J Clifton; Peter L Roach; Jack E Baldwin; Christopher J Schofield; Peter J Rutledge
Journal:  Biochem J       Date:  2003-06-15       Impact factor: 3.857

Review 2.  Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes.

Authors:  Spencer C Peck; Wilfred A van der Donk
Journal:  J Biol Inorg Chem       Date:  2016-10-25       Impact factor: 3.358

3.  X-ray free-electron laser studies reveal correlated motion during isopenicillin N synthase catalysis.

Authors:  Patrick Rabe; Jos J A G Kamps; Kyle D Sutherlin; James D S Linyard; Pierre Aller; Cindy C Pham; Hiroki Makita; Ian Clifton; Michael A McDonough; Thomas M Leissing; Denis Shutin; Pauline A Lang; Agata Butryn; Jürgen Brem; Sheraz Gul; Franklin D Fuller; In-Sik Kim; Mun Hon Cheah; Thomas Fransson; Asmit Bhowmick; Iris D Young; Lee O'Riordan; Aaron S Brewster; Ilaria Pettinati; Margaret Doyle; Yasumasa Joti; Shigeki Owada; Kensuke Tono; Alexander Batyuk; Mark S Hunter; Roberto Alonso-Mori; Uwe Bergmann; Robin L Owen; Nicholas K Sauter; Timothy D W Claridge; Carol V Robinson; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville; Christopher J Schofield
Journal:  Sci Adv       Date:  2021-08-20       Impact factor: 14.957

4.  Anaerobic fixed-target serial crystallography.

Authors:  Patrick Rabe; John H Beale; Agata Butryn; Pierre Aller; Anna Dirr; Pauline A Lang; Danny N Axford; Stephen B Carr; Thomas M Leissing; Michael A McDonough; Bradley Davy; Ali Ebrahim; Julien Orlans; Selina L S Storm; Allen M Orville; Christopher J Schofield; Robin L Owen
Journal:  IUCrJ       Date:  2020-08-21       Impact factor: 4.769

5.  Spectroscopic Evidence for the Two C-H-Cleaving Intermediates of Aspergillus nidulans Isopenicillin N Synthase.

Authors:  Esta Tamanaha; Bo Zhang; Yisong Guo; Wei-Chen Chang; Eric W Barr; Gang Xing; Jennifer St Clair; Shengfa Ye; Frank Neese; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2016-07-05       Impact factor: 15.419

6.  Active-site-mediated elimination of hydrogen fluoride from a fluorinated substrate analogue by isopenicillin N synthase.

Authors:  Annaleise R Grummitt; Peter J Rutledge; Ian J Clifton; Jack E Baldwin
Journal:  Biochem J       Date:  2004-09-01       Impact factor: 3.857

7.  VTVH-MCD and DFT studies of thiolate bonding to [FeNO]7/[FeO2]8 complexes of isopenicillin N synthase: substrate determination of oxidase versus oxygenase activity in nonheme Fe enzymes.

Authors:  Christina D Brown; Michael L Neidig; Matthew B Neibergall; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-05-17       Impact factor: 15.419

8.  Spectroscopic and Electronic Structure Study of ETHE1: Elucidating the Factors Influencing Sulfur Oxidation and Oxygenation in Mononuclear Nonheme Iron Enzymes.

Authors:  Serra Goudarzi; Jeffrey T Babicz; Omer Kabil; Ruma Banerjee; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-10-26       Impact factor: 15.419

9.  Terminally Truncated Isopenicillin N Synthase Generates a Dithioester Product: Evidence for a Thioaldehyde Intermediate during Catalysis and a New Mode of Reaction for Non-Heme Iron Oxidases.

Authors:  Luke A McNeill; Toby J N Brown; Malkit Sami; Ian J Clifton; Nicolai I Burzlaff; Timothy D W Claridge; Robert M Adlington; Jack E Baldwin; Peter J Rutledge; Christopher J Schofield
Journal:  Chemistry       Date:  2017-08-21       Impact factor: 5.236

10.  Use of ferrous iron by metallo-β-lactamases.

Authors:  Samuel T Cahill; Hanna Tarhonskaya; Anna M Rydzik; Emily Flashman; Michael A McDonough; Christopher J Schofield; Jürgen Brem
Journal:  J Inorg Biochem       Date:  2016-07-26       Impact factor: 4.155

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