Literature DB >> 30362717

Spectroscopic and Electronic Structure Study of ETHE1: Elucidating the Factors Influencing Sulfur Oxidation and Oxygenation in Mononuclear Nonheme Iron Enzymes.

Serra Goudarzi1, Jeffrey T Babicz1, Omer Kabil2, Ruma Banerjee2, Edward I Solomon1,3.   

Abstract

class="Gene">ETHE1 is a member of a growing subclass of nonheme Fe enzymes that catalyzes transformations of <class="Chemical">span class="Chemical">sulfur-containing substrates without a cofactor. ETHE1 dioxygenates glutathione persulfide (GSSH) to glutathione (GSH) and sulfite in a reaction which is similar to that of cysteine dioxygenase (CDO), but with monodentate (vs bidentate) substrate coordination and a 2-His/1-Asp (vs 3-His) ligand set. In this study, we demonstrate that GSS- binds directly to the iron active site, causing coordination unsaturation to prime the site for O2 activation. Nitrosyl complexes without and with GSSH were generated and spectroscopically characterized as unreactive analogues for the invoked ferric superoxide intermediate. New spectral features from persulfide binding to the FeIII include the appearance of a low-energy FeIII ligand field transition, an energy shift of a NO- to FeIII CT transition, and two new GSS- to FeIII CT transitions. Time-dependent density functional theory calculations were used to simulate the experimental spectra to determine the persulfide orientation. Correlation of these spectral features with those of monodentate cysteine binding in isopenicillin N synthase (IPNS) shows that the persulfide is a poorer donor but still results in an equivalent frontier molecular orbital for reactivity. The ETHE1 persulfide dioxygenation reaction coordinate was calculated, and while the initial steps are similar to the reaction coordinate of CDO, an additional hydrolysis step is required in ETHE1 to break the S-S bond. Unlike ETHE1 and CDO, which both oxygenate sulfur, IPNS oxidizes sulfur through an initial H atom abstraction. Thus, factors that determine oxygenase vs oxidase reactivity were evaluated. In general, sulfur oxygenation is thermodynamically favored and has a lower barrier for reactivity. However, in IPNS, second-sphere residues in the active site pocket constrain the substrate, raising the barrier for sulfur oxygenation relative to oxidation via H atom abstraction.

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Year:  2018        PMID: 30362717      PMCID: PMC6221977          DOI: 10.1021/jacs.8b09022

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  46 in total

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Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

2.  Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation.

Authors:  P L Roach; I J Clifton; C M Hensgens; N Shibata; C J Schofield; J Hajdu; J E Baldwin
Journal:  Nature       Date:  1997-06-19       Impact factor: 49.962

3.  The reaction cycle of isopenicillin N synthase observed by X-ray diffraction.

Authors:  N I Burzlaff; P J Rutledge; I J Clifton; C M Hensgens; M Pickford; R M Adlington; P L Roach; J E Baldwin
Journal:  Nature       Date:  1999-10-14       Impact factor: 49.962

4.  A new gene (alkB) of Escherichia coli that controls sensitivity to methyl methane sulfonate.

Authors:  H Kataoka; Y Yamamoto; M Sekiguchi
Journal:  J Bacteriol       Date:  1983-03       Impact factor: 3.490

5.  Spectroscopic Evidence for the Two C-H-Cleaving Intermediates of Aspergillus nidulans Isopenicillin N Synthase.

Authors:  Esta Tamanaha; Bo Zhang; Yisong Guo; Wei-Chen Chang; Eric W Barr; Gang Xing; Jennifer St Clair; Shengfa Ye; Frank Neese; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2016-07-05       Impact factor: 15.419

6.  Loss of ETHE1, a mitochondrial dioxygenase, causes fatal sulfide toxicity in ethylmalonic encephalopathy.

Authors:  Valeria Tiranti; Carlo Viscomi; Tatjana Hildebrandt; Ivano Di Meo; Rossana Mineri; Cecilia Tiveron; Michael D Levitt; Alessandro Prelle; Gigliola Fagiolari; Marco Rimoldi; Massimo Zeviani
Journal:  Nat Med       Date:  2009-01-11       Impact factor: 53.440

Review 7.  Sulfur amino acid metabolism: pathways for production and removal of homocysteine and cysteine.

Authors:  Martha H Stipanuk
Journal:  Annu Rev Nutr       Date:  2004       Impact factor: 11.848

8.  EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment.

Authors:  D M Arciero; J D Lipscomb; B H Huynh; T A Kent; E Münck
Journal:  J Biol Chem       Date:  1983-12-25       Impact factor: 5.157

9.  Thiolate ligation of the active site Fe2+ of isopenicillin N synthase derives from substrate rather than endogenous cysteine: spectroscopic studies of site-specific Cys----Ser mutated enzymes.

Authors:  A M Orville; V J Chen; A Kriauciunas; M R Harpel; B G Fox; E Münck; J D Lipscomb
Journal:  Biochemistry       Date:  1992-05-19       Impact factor: 3.162

10.  VTVH-MCD and DFT studies of thiolate bonding to [FeNO]7/[FeO2]8 complexes of isopenicillin N synthase: substrate determination of oxidase versus oxygenase activity in nonheme Fe enzymes.

Authors:  Christina D Brown; Michael L Neidig; Matthew B Neibergall; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-05-17       Impact factor: 15.419

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  4 in total

1.  Electronic Structure and Reactivity of Dioxygen-Derived Aliphatic Thiolate-Ligated Fe-Peroxo and Fe(IV) Oxo Compounds.

Authors:  Maksym A Dedushko; Maria B Greiner; Alexandra N Downing; Michael Coggins; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2022-05-06       Impact factor: 16.383

2.  Proton-Coupled Electron-Transfer Reactivity Controls Iron versus Sulfur Oxidation in Nonheme Iron-Thiolate Complexes.

Authors:  Jesse B Gordon; Jeremy P McGale; Maxime A Siegler; David P Goldberg
Journal:  Inorg Chem       Date:  2021-04-19       Impact factor: 5.165

3.  Mechanisms of O2 Activation by Mononuclear Non-Heme Iron Enzymes.

Authors:  Edward I Solomon; Dory E DeWeese; Jeffrey T Babicz
Journal:  Biochemistry       Date:  2021-07-15       Impact factor: 3.162

4.  Spontaneous dissection of proximal left main coronary artery in a healthy adolescent presenting with syncope: A case report.

Authors:  Sui-Feng Liu; Ya-Nan Zhao; Chun-Wen Jia; Tian-Yi Ma; Shi-Da Cai; Feng Gao
Journal:  World J Clin Cases       Date:  2022-03-06       Impact factor: 1.337

  4 in total

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