Literature DB >> 9020766

Contribution of the hydrophobic effect to the stability of human lysozyme: calorimetric studies and X-ray structural analyses of the nine valine to alanine mutants.

K Takano1, Y Yamagata, S Fujii, K Yutani.   

Abstract

To clarify the contribution of the hydrophobic effect to the conformational stability of human lysozyme, a series of Val to Ala mutants were constructed. The thermodynamic parameters for the denaturation of these nine mutant proteins were determined using differential scanning calorimetry (DSC), and the crystal structures were solved at high resolution. The denaturation Gibbs energy (delta delta G) and enthalpy (delta delta H) values of the mutant proteins ranged from +2.2 to- 6.3 kJ/mol and from +7 to -17 kJ/mol, respectively. The structural analyses showed that the mutation site and/or the residues around it in some proteins shifted toward the created cavity, and the substitutions affected not only the mutations site but also other parts far from the site, although the structural changes were not as great. Correlation between the changes in the thermodynamic parameters and the structural features of mutant proteins was examined, including the five Ile to Val mutant human lysozymes [Takano et al. (1995) J. Mol. Biol. 254, 62-76]. There was no simple general correlation between delta delta G and the changes in hydrophobic surface area exposed upon denaturation (delta delta ASAHP). We found only a new correlation between the delta delta G and delta delta ASAHP of all of the hydrophobic residues if the effect of the secondary structure propensity was taken into account.

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Year:  1997        PMID: 9020766     DOI: 10.1021/bi9621829

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  Heat capacity changes upon burial of polar and nonpolar groups in proteins.

Authors:  V V Loladze; D N Ermolenko; G I Makhatadze
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2.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

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Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

Review 3.  Differential scanning calorimetry techniques: applications in biology and nanoscience.

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Journal:  J Biomol Tech       Date:  2010-12

4.  Translational-entropy gain of solvent upon protein folding.

Authors:  Yuichi Harano; Masahiro Kinoshita
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

5.  Energetics of aliphatic deletions in protein cores.

Authors:  Marta Bueno; Luis A Campos; Jorge Estrada; Javier Sancho
Journal:  Protein Sci       Date:  2006-08       Impact factor: 6.725

6.  Role of protein cavities on unfolding volume change and on internal dynamics under pressure.

Authors:  Patrizia Cioni
Journal:  Biophys J       Date:  2006-11-01       Impact factor: 4.033

7.  Structure-based protocol for identifying mutations that enhance protein-protein binding affinities.

Authors:  Deanne W Sammond; Ziad M Eletr; Carrie Purbeck; Randall J Kimple; David P Siderovski; Brian Kuhlman
Journal:  J Mol Biol       Date:  2007-06-08       Impact factor: 5.469

8.  Dependence of protein stability on the structure of the denatured state: free energy calculations of I56V mutation in human lysozyme.

Authors:  Y Sugita; A Kitao
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

9.  Crystal structure of D-Hydantoinase from Burkholderia pickettii at a resolution of 2.7 Angstroms: insights into the molecular basis of enzyme thermostability.

Authors:  Zhen Xu; Yunqing Liu; Yunliu Yang; Weihong Jiang; Eddy Arnold; Jianping Ding
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

Review 10.  Slow unfolding of monomeric proteins from hyperthermophiles with reversible unfolding.

Authors:  Atsushi Mukaiyama; Kazufumi Takano
Journal:  Int J Mol Sci       Date:  2009-03-24       Impact factor: 6.208

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