Literature DB >> 9016552

Histone and histone fold sequences and structures: a database.

A D Baxevanis1, D Landsman.   

Abstract

A database of aligned histone protein sequences has been constructed based on the results of homology searches of the major public sequence databases. In addition, sequences of proteins identified as containing the histone fold motif and structures of all known histone and histone fold proteins have been included in the current release. Database resources include information on conflicts between similar sequence entries in different source databases, multiple sequence alignments, and links to the Entrez integrated information retrieval system at the National Center for Biotechnology Information (NCBI). The database currently contains over 1000 protein sequences. All sequences and alignments in this database are available through the World Wide Web at: http: //www.ncbi.nlm.nih.gov/Baxevani/HISTONES/ .

Mesh:

Substances:

Year:  1997        PMID: 9016552      PMCID: PMC146383          DOI: 10.1093/nar/25.1.272

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  CLUSTAL V: improved software for multiple sequence alignment.

Authors:  D G Higgins; A J Bleasby; R Fuchs
Journal:  Comput Appl Biosci       Date:  1992-04

3.  The Internet biologist.

Authors:  A D Baxevanis; D Landsman
Journal:  FASEB J       Date:  1995-08       Impact factor: 5.191

4.  Histone H1 in Saccharomyces cerevisiae: a double mystery solved?

Authors:  D Landsman
Journal:  Trends Biochem Sci       Date:  1996-08       Impact factor: 13.807

5.  Chromatin structure; oligomers of the histones.

Authors:  R D Kornberg; J O Thomas
Journal:  Science       Date:  1974-05-24       Impact factor: 47.728

6.  ALSCRIPT: a tool to format multiple sequence alignments.

Authors:  G J Barton
Journal:  Protein Eng       Date:  1993-01

7.  Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA.

Authors:  G Arents; E N Moudrianakis
Journal:  Proc Natl Acad Sci U S A       Date:  1993-11-15       Impact factor: 11.205

8.  A variety of DNA-binding and multimeric proteins contain the histone fold motif.

Authors:  A D Baxevanis; G Arents; E N Moudrianakis; D Landsman
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

9.  Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks.

Authors:  R L Tatusov; S F Altschul; E V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-06       Impact factor: 11.205

10.  NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone.

Authors:  M R Starich; K Sandman; J N Reeve; M F Summers
Journal:  J Mol Biol       Date:  1996-01-12       Impact factor: 5.469

View more
  5 in total

1.  GapA and CrmA coexpression is essential for Mycoplasma gallisepticum cytadherence and virulence.

Authors:  L Papazisi; S Frasca; M Gladd; X Liao; D Yogev; S J Geary
Journal:  Infect Immun       Date:  2002-12       Impact factor: 3.441

2.  Identification and cloning of two putative subunits of DNA polymerase epsilon in fission yeast.

Authors:  Maria-Grazia Spiga; Gennaro D'Urso
Journal:  Nucleic Acids Res       Date:  2004-09-23       Impact factor: 16.971

3.  Evolutionary conservation of histone macroH2A subtypes and domains.

Authors:  J R Pehrson; R N Fuji
Journal:  Nucleic Acids Res       Date:  1998-06-15       Impact factor: 16.971

4.  Stimulation of human DNA polymerase epsilon by MDM2.

Authors:  Hitomi Asahara; Ying Li; Jill Fuss; Dale S Haines; Nikolina Vlatkovic; Mark T Boyd; Stuart Linn
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

5.  Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme.

Authors:  T I Lee; J J Wyrick; S S Koh; E G Jennings; E L Gadbois; R A Young
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.